View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18613_low_9 (Length: 275)
Name: NF18613_low_9
Description: NF18613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18613_low_9 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 24720755 - 24720481
Alignment:
| Q |
1 |
ttggtttatcattaacttattcgtttcagtcgttactttagtctgccacaccaactgcatcgaattggtttatcaactgtcacgtcgtatgcattcaaat |
100 |
Q |
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| T |
24720755 |
ttggtttatcattaacttattcgtttcagtcgttactttagtctgccacaccaactgcatcgaattggtttatcaactgtcacgtcgtatgcattcaaat |
24720656 |
T |
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| Q |
101 |
tctgctactattgctcctctgcctccgaatttggaaccaccgcaagcagcttaggtgtaacattcatgtggcttagtttagttcatatgtatactagttg |
200 |
Q |
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| T |
24720655 |
tctgctactattgctcctctgcctccgaatttggaaccaccgcaagcagctcaggtgtaacattcatgtggcttagtttagttcatatgtatactagttg |
24720556 |
T |
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| Q |
201 |
tccatccaaatagagcaagttcgaggacacaaaattgaaaaaggaaaataggtgtatatgtgtagtaattgaaat |
275 |
Q |
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| T |
24720555 |
tccatccaaatagagcaagttcgaggacacaaaattgaaaaaggaacataggtgtatatgtgtagtaattgaaat |
24720481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 24733449 - 24733522
Alignment:
| Q |
1 |
ttggtttatcattaacttattcgtttcagtcgttactttagtctgccacaccaactgcatcgaattggtttatc |
74 |
Q |
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| T |
24733449 |
ttggtgtatcatcaactcattcgttttagtggttactttagtctgccacaccaactgcatcgaattggtgtatc |
24733522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 94 - 174
Target Start/End: Original strand, 18157868 - 18157949
Alignment:
| Q |
94 |
ttcaaattctgctactattgctcctctgcctccgaatttggaaccaccgcaagcagcttaggtgt-aacattcatgtggctt |
174 |
Q |
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| T |
18157868 |
ttcaaatgctgctgctattgctcctctgcctccaaatttggaaccacagccagcagctcaggtctaaatattcatgtggctt |
18157949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 199 - 272
Target Start/End: Complemental strand, 24692934 - 24692859
Alignment:
| Q |
199 |
tgtccatccaaatagagcaagttcgaggacacaaaattgaaaaaggaaaata--ggtgtatatgtgtagtaattga |
272 |
Q |
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| T |
24692934 |
tgtccatccaaatagagcaagttcaaggacacaaagttgaaaaagggacataggggtgtatatgcgtaataattga |
24692859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 18157772 - 18157819
Alignment:
| Q |
19 |
attcgtttcagtcgttactttagtctgccacaccaactgcatcgaatt |
66 |
Q |
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| T |
18157772 |
attcgttttagtagttactttagtcttccacaccaactgcattgaatt |
18157819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 94 - 174
Target Start/End: Original strand, 15282256 - 15282337
Alignment:
| Q |
94 |
ttcaaattctgctactattgctcctctgcctccgaatttggaaccaccgcaagcagcttaggtgt-aacattcatgtggctt |
174 |
Q |
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| T |
15282256 |
ttcaaatgctgctgctattgctcctctgcctccaaatttggaaccacagccagcagctcaggtctaaatattcatgtggctt |
15282337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 15282160 - 15282207
Alignment:
| Q |
19 |
attcgtttcagtcgttactttagtctgccacaccaactgcatcgaatt |
66 |
Q |
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| T |
15282160 |
attcgttttagtagttactttagtcttccacaccaactgcattgaatt |
15282207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 94 - 174
Target Start/End: Original strand, 24223754 - 24223835
Alignment:
| Q |
94 |
ttcaaattctgctactattgctcctctgcctccgaatttggaaccaccgcaagcagcttaggtgt-aacattcatgtggctt |
174 |
Q |
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| T |
24223754 |
ttcaaatgctgctgctattgctcctctgcctccaaatttggaaccacagccagcagctcaggtctaaatattcatgtggctt |
24223835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 24223658 - 24223705
Alignment:
| Q |
19 |
attcgtttcagtcgttactttagtctgccacaccaactgcatcgaatt |
66 |
Q |
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| T |
24223658 |
attcgttttagtagttactttagtcttccacaccaactgcattgaatt |
24223705 |
T |
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