View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18614_high_4 (Length: 415)
Name: NF18614_high_4
Description: NF18614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18614_high_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 12 - 397
Target Start/End: Complemental strand, 26017996 - 26017602
Alignment:
| Q |
12 |
aagaacattgcaattaattgatgaagtcctataccttttcccataatccatctgaagctaagattaacaagtcatggtgaggttcaattctgagtacttt |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
26017996 |
aagaacattgcaattaattgatgaagtcctataccttttcccataatccatctgaagctaagattaaaaagtcatgatgaggttcaattctgagtacttt |
26017897 |
T |
|
| Q |
112 |
ggtctcaggctctgctatcacccattgtttcatgtgtccatcaccaatgctccttgaaacagcaagagatccttggattctccaaacaccgcggcacata |
211 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26017896 |
ggtctcaggttctgctatcacatattgtttcatgtgtctatctccaatgctccttgaaacagcaagagatccttggattctccaaacaccgcggcacata |
26017797 |
T |
|
| Q |
212 |
tcaacatatcctccct----nnnnnnnttcaaaactaatttagtacctttaagatatcctaaactacaaacaaaggtttcaattacgaaagacaaacagg |
307 |
Q |
| |
|
|| ||||||||||||| ||||||||||| | |||||||| | || |||||||||| ||||||||||||||||| || ||||||| | |
|
|
| T |
26017796 |
tctacatatcctccctacaaaataaatttcaaaactaactaagtaccttcatgagatcctaaact----acaaaggtttcaattaccaacgacaaacgga |
26017701 |
T |
|
| Q |
308 |
aaaatcgccatcatcatc---------atcacttacctgagtttcaatccgttccttttcgtctttcctcgaaggtttgtgatcagatgttaaggcctc |
397 |
Q |
| |
|
||||| || ||||||||| |||| |||||||||||||||| ||||| |||||||||||||| |||||||||||||| || ||||||||||| |
|
|
| T |
26017700 |
aaaattgctatcatcatcattatcataatcaattacctgagtttcaattcgttctttttcgtctttccttgaaggtttgtgatccgacgttaaggcctc |
26017602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 15 - 227
Target Start/End: Complemental strand, 26003247 - 26003035
Alignment:
| Q |
15 |
aacattgcaattaattgatgaagtcctataccttttcccataatccatctgaagctaagattaacaagtcatggtgaggttcaattctgagtactttggt |
114 |
Q |
| |
|
||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
26003247 |
aacatcgcaattaattggtcaagtcctataccttttcccataatccatctgaagctaagattaacaagtcatgatgaggttcaattctgagtactttggt |
26003148 |
T |
|
| Q |
115 |
ctcaggctctgctatcacccattgtttcatgtgtccatcaccaatgctccttgaaacagcaagagatccttggattctccaaacaccgcggcacatatca |
214 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26003147 |
ctcaggttctgctatcacatattgtttcatgtgtctatctccaatgctccttgaaacagcaagagatccttggattctccaaacaccgcggcacatatcg |
26003048 |
T |
|
| Q |
215 |
acatatcctccct |
227 |
Q |
| |
|
||||||||||||| |
|
|
| T |
26003047 |
acatatcctccct |
26003035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 331 - 394
Target Start/End: Complemental strand, 26002856 - 26002793
Alignment:
| Q |
331 |
ttacctgagtttcaatccgttccttttcgtctttcctcgaaggtttgtgatcagatgttaaggc |
394 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
26002856 |
ttacctgagtctcaatccgttctttttcgtctttcctcgaaggtttgtgatctgatgttaaggc |
26002793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 43 - 219
Target Start/End: Complemental strand, 30374471 - 30374295
Alignment:
| Q |
43 |
taccttttcccataatccatctgaagctaagattaacaagtcatggtgaggttcaattctgagtactttggtctcaggctctgctatcacccattgtttc |
142 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||||||||||| | |||||||||||| | ||||| ||||| ||||| ||| |||||||||||||| |
|
|
| T |
30374471 |
taccttatcccataatccatctgaagctaatattaacaagtcatgttcaggttcaattctaataactttagtctcgggctccgctgtcacccattgtttc |
30374372 |
T |
|
| Q |
143 |
atgtgtccatcaccaatgctccttgaaacagcaagagatccttggattctccaaacaccgcggcacatatcaacata |
219 |
Q |
| |
|
| ||||| || ||||| | ||||| ||||||||||||||||| || |||||||||||||| || | ||||||||| |
|
|
| T |
30374371 |
aagtgtcggtctccaattcctcttgatacagcaagagatccttgaatcctccaaacaccgcgacataaatcaacata |
30374295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University