View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18614_low_3 (Length: 417)
Name: NF18614_low_3
Description: NF18614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18614_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 16 - 401
Target Start/End: Original strand, 1319743 - 1320150
Alignment:
| Q |
16 |
atgagaaatttttagtaacaaagacggggaaaaacaattgtcaaatcatttnnnnnnnntgttagttaaacatggtagaaatatataaatttgtggatat |
115 |
Q |
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| T |
1319743 |
atgagaaatttttagtaacagagacggggaaaaacaattgtcaaatcatttaataataatgttagttaaatatggcagaaatata--aatttgtggatat |
1319840 |
T |
|
| Q |
116 |
atgaaactacttgttcgtggatatataggctcaacacaacattgtctc--agagnnnnnnnng---tggcaacaaatagatagataatagagcaagagcc |
210 |
Q |
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| T |
1319841 |
atgaaactacttgttcgtggatatataggctcaacacaacattgtctctcagagaaaaaaaagaagtggcaacaaatagatagataatagagcaagagcc |
1319940 |
T |
|
| Q |
211 |
acaaatttgaagcttcaaggataggattttatctttaataacatccattgtttttcttctccataacatatgatatatgaaacattggttccaacggata |
310 |
Q |
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| T |
1319941 |
acaaatttgaagcttcaaggataggattttatctttaataacatccattgcttttcttctccataacgtatgatatatgaaccattggttccaacggata |
1320040 |
T |
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| Q |
311 |
gaagttactgctatttaattattttcaatat-------------------cttaaatagtgcaaaaataaattgggtactatagttatattcaatttcat |
391 |
Q |
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| T |
1320041 |
gaagttactgttatttaattattttcaatatttccttcttggatcttcaacttaaatagtgcaaaaataaattgggtactatagttatattcaatttcat |
1320140 |
T |
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| Q |
392 |
ccttgagagg |
401 |
Q |
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| T |
1320141 |
ccttgagagg |
1320150 |
T |
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