View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18614_low_6 (Length: 249)
Name: NF18614_low_6
Description: NF18614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18614_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 55956494 - 55956718
Alignment:
| Q |
1 |
gaagtgatcctcctaatgctagttgatgcaagtttcctattaaaggaagcttccatggtcctggtggaagtttatgaacctcgttcttcactttgatttt |
100 |
Q |
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| T |
55956494 |
gaagtgatcctcctaatgctagttgatgcaagtttcctattaaaggaagcttccatggtcctggtggaagtttatgaacctcgttcttcactttgatttt |
55956593 |
T |
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| Q |
101 |
ctgcttataaatctttgttaaacaaagtatcaagaagatgaatgaggaaatgatgaggaaggaaaatttgaattccatggcatacattgaaattggcact |
200 |
Q |
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| T |
55956594 |
ctgcttataaatctttgttaaacaaagtatcaagaagatgaatgaggaaatgatgaggaaggaaaatttgaattccatggcatacagtgaaattggcact |
55956693 |
T |
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| Q |
201 |
tatgaccttgagactgatctatgtc |
225 |
Q |
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| T |
55956694 |
tatgaccttgagactgatctatgtc |
55956718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 132 - 184
Target Start/End: Original strand, 55960004 - 55960056
Alignment:
| Q |
132 |
aagaagatgaatgaggaaatgatgaggaaggaaaatttgaattccatggcata |
184 |
Q |
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| T |
55960004 |
aagaagatgaatgaggaaatgatgagtaaggaagatttcaattccatggcata |
55960056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 8 - 178
Target Start/End: Original strand, 12426831 - 12426995
Alignment:
| Q |
8 |
tcctcctaatgctagttgatgcaagtttcctattaaaggaagcttccatggtcctggtggaagtttatgaacctcgttcttcactttgattttctgctta |
107 |
Q |
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| T |
12426831 |
tcctgctaatgctagttgatgcaagtttcctattagaggaagcttccatggtcctggtggaagtttatg------gctcctcattttgattttctgcttg |
12426924 |
T |
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| Q |
108 |
taaatctttgttaaacaaagtatcaagaagatgaatgaggaaatgatgaggaaggaaaatttgaattccat |
178 |
Q |
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|| || |||| || |||| | |||||||||||||||||||| || | ||||||| ||||| ||||||| |
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| T |
12426925 |
tagatttttgctaggaaaagcagaaagaagatgaatgaggaaattatcaagaaggaagatttggattccat |
12426995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 23 - 178
Target Start/End: Complemental strand, 12265974 - 12265825
Alignment:
| Q |
23 |
ttgatgcaagtttcctattaaaggaagcttccatggtcctggtggaagtttatgaacctcgttcttcactttgattttctgcttataaatctttgttaaa |
122 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||| | || ||||||||||||| ||||| || ||||||| || |
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| T |
12265974 |
ttgatgcaagtttcctattagaggaagcttccatggtcctggtggaagtttatg------gctcctcactttgattttatgcttgtagatctttgctagg |
12265881 |
T |
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| Q |
123 |
caaagtatcaagaagatgaatgaggaaatgatgaggaaggaaaatttgaattccat |
178 |
Q |
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||| || |||||||||||| |||||||| | || ||||| | |||||| |||||| |
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| T |
12265880 |
aaaattagcaagaagatgaaggaggaaattaggaagaagggagatttgagttccat |
12265825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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