View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18615_high_7 (Length: 353)
Name: NF18615_high_7
Description: NF18615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18615_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 304; Significance: 1e-171; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 20 - 343
Target Start/End: Complemental strand, 28438090 - 28437767
Alignment:
| Q |
20 |
actttgattaatcagtaatagttttgctaaaccaaaatcggaaatcttagcattgtaatcatcatctagaagtatgttttgtggctttatgtcacaatgg |
119 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28438090 |
actttgattaatcagtaatagttttgctaaaccgaaatcggaaatcttagcattgtaatcatcatctagaagtatgttttgtggctttatgtcacaatgg |
28437991 |
T |
|
| Q |
120 |
atgatttgggtgcaacattcctcatgcaagtaaacaagacctcttgcaattccggtggcaatttgaactcgttggttccaatttggtttcaaaggagtga |
219 |
Q |
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||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
28437990 |
atgatttgggtgcaacagtcctcatgcaagtaaataagacctcttgcaattccggtggcaatttgaactcgttggttccaacttggtttcaaaggagtga |
28437891 |
T |
|
| Q |
220 |
aaaggaagcttgctaaagtaccattactcatcaattcatacacaaaaatccggtgttgatcgtcactgcaatacccatgaagacgaacaagattcctatg |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28437890 |
aaaggaagcttgctaaagtaccattactcatcaattcatacaccaaaatccggtgttgatcgtcactgcaatacccatgaagacgaacaagattcctatg |
28437791 |
T |
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| Q |
320 |
atgagtttcgagtatcacattcat |
343 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
28437790 |
atgagtttcgagtatcacattcat |
28437767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 21 - 327
Target Start/End: Complemental strand, 28488145 - 28487839
Alignment:
| Q |
21 |
ctttgattaatcagtaatagttttgctaaaccaaaatcggaaatcttagcattgtaatcatcatctagaagtatgttttgtggctttatgtcacaatgga |
120 |
Q |
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||||||||||||| ||||| |||| ||| |||||||| |||||| | |||||||| | ||||||||||||||| |||||||||||||| |||||||||| |
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| T |
28488145 |
ctttgattaatcaacaatagctttgataatccaaaatctgaaatccttgcattgtattgatcatctagaagtatattttgtggctttatatcacaatgga |
28488046 |
T |
|
| Q |
121 |
tgatttgggtgcaacattcctcatgcaagtaaacaagacctcttgcaattccggtggcaatttgaactcgttggttccaatttggtttcaaaggagtgaa |
220 |
Q |
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||||||||||||||||| |||| ||||||||||||||||||||||||||||| | ||| || ||||||||||||||||||||||| |||| |||||| |
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| T |
28488045 |
tgatttgggtgcaacatccctcgtgcaagtaaacaagacctcttgcaattcccaggataatgtggactcgttggttccaatttggttttaaagaagtgaa |
28487946 |
T |
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| Q |
221 |
aaggaagcttgctaaagtaccattactcatcaattcatacacaaaaatccggtgttgatcgtcactgcaatacccatgaagacgaacaagattcctatga |
320 |
Q |
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||| ||||| |||||||| ||||||||||| || || || || |||||||| ||||| | ||| |||| || ||| ||||||||||||||||||||||| |
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| T |
28487945 |
aagaaagctcgctaaagttccattactcatgaactcgtataccaaaatccgatgttgtccctcattgcagtatccaagaagacgaacaagattcctatga |
28487846 |
T |
|
| Q |
321 |
tgagttt |
327 |
Q |
| |
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|||||| |
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| T |
28487845 |
agagttt |
28487839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 21 - 320
Target Start/End: Complemental strand, 28466384 - 28466085
Alignment:
| Q |
21 |
ctttgattaatcagtaatagttttgctaaaccaaaatcggaaatcttagcattgtaatcatcatctagaagtatgttttgtggctttatgtcacaatgga |
120 |
Q |
| |
|
||||||||||||| ||||| |||| ||| |||||||| |||||| | |||||||| | ||||||||||||||| |||||||||||||| |||||||||| |
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| T |
28466384 |
ctttgattaatcaacaatagctttgataatccaaaatctgaaatccttgcattgtattgatcatctagaagtatattttgtggctttatatcacaatgga |
28466285 |
T |
|
| Q |
121 |
tgatttgggtgcaacattcctcatgcaagtaaacaagacctcttgcaattccggtggcaatttgaactcgttggttccaatttggtttcaaaggagtgaa |
220 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||||||||||||| || | ||| || |||||||||||||||| |||||| || || ||||| |
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| T |
28466284 |
tgatttgggtgcaacatccctcatgcaagtaaacaagacctcttgcaatccccaggataatgtggactcgttggttccaatctggttttaatggggtgaa |
28466185 |
T |
|
| Q |
221 |
aaggaagcttgctaaagtaccattactcatcaattcatacacaaaaatccggtgttgatcgtcactgcaatacccatgaagacgaacaagattcctatga |
320 |
Q |
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||| ||||| |||||||||||||||||||| || || || || |||||||| ||||| | ||| |||| || ||| ||||||||||||||||||||||| |
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| T |
28466184 |
aagaaagctcgctaaagtaccattactcatgaactcgtataccaaaatccgatgttgtccctcattgcagtatccaagaagacgaacaagattcctatga |
28466085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 21 - 327
Target Start/End: Complemental strand, 28445538 - 28445232
Alignment:
| Q |
21 |
ctttgattaatcagtaatagttttgctaaaccaaaatcggaaatcttagcattgtaatcatcatctagaagtatgttttgtggctttatgtcacaatgga |
120 |
Q |
| |
|
||||||||||||| |||| |||||||| |||||||| ||||| | |||||||| | ||||||||||||||| |||||||||||||| || ||||||| |
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| T |
28445538 |
ctttgattaatcaacaataactttgctaatccaaaatctgaaattcttgcattgtattgatcatctagaagtatattttgtggctttatatcgcaatgga |
28445439 |
T |
|
| Q |
121 |
tgatttgggtgcaacattcctcatgcaagtaaacaagacctcttgcaattccggtggcaatttgaactcgttggttccaatttggtttcaaaggagtgaa |
220 |
Q |
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|||||||||||||||| |||| |||||||||||||||||||||||||| || | ||| || |||||||||||||||| |||||| || || ||||| |
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| T |
28445438 |
tgatttgggtgcaacacccctcgtgcaagtaaacaagacctcttgcaatccccaggataatgtggactcgttggttccaatctggttttaatggggtgaa |
28445339 |
T |
|
| Q |
221 |
aaggaagcttgctaaagtaccattactcatcaattcatacacaaaaatccggtgttgatcgtcactgcaatacccatgaagacgaacaagattcctatga |
320 |
Q |
| |
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||| ||||| |||||||| ||||||||||| || ||||| | ||||| || || || | || ||||||| ||| ||||||||||||||||||||||| |
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| T |
28445338 |
aagaaagctagctaaagtgccattactcattaactcatatgccaaaatgcgatgctgtccttcgttgcaatatccaagaagacgaacaagattcctatga |
28445239 |
T |
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| Q |
321 |
tgagttt |
327 |
Q |
| |
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||||||| |
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| T |
28445238 |
tgagttt |
28445232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 45 - 121
Target Start/End: Complemental strand, 3056730 - 3056654
Alignment:
| Q |
45 |
gctaaaccaaaatcggaaatcttagcattgtaatcatcatctagaagtatgttttgtggctttatgtcacaatggat |
121 |
Q |
| |
|
||||| |||||||| ||||| | |||||| ||| |||||| || ||||||||||| |||||||||||||||||||| |
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| T |
3056730 |
gctaatccaaaatcagaaattcttgcattgaaataatcatccaggagtatgttttgaggctttatgtcacaatggat |
3056654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 124
Target Start/End: Complemental strand, 3035865 - 3035783
Alignment:
| Q |
42 |
tttgctaaaccaaaatcggaaatcttagcattgtaatcatcatctagaagtatgttttgtggctttatgtcacaatggatgat |
124 |
Q |
| |
|
|||||||| |||||||| ||||| | |||||| | | |||||| || ||||||||||| ||||||||||||||||| ||||| |
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|
| T |
3035865 |
tttgctaatccaaaatcagaaattcttgcattgaagtaatcatcaaggagtatgttttgaggctttatgtcacaatgaatgat |
3035783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 124
Target Start/End: Original strand, 3070179 - 3070261
Alignment:
| Q |
42 |
tttgctaaaccaaaatcggaaatcttagcattgtaatcatcatctagaagtatgttttgtggctttatgtcacaatggatgat |
124 |
Q |
| |
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|||||||| |||||||| ||||| | |||||| | | |||||| || |||||||| || ||||||||||||||||||||||| |
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| T |
3070179 |
tttgctaatccaaaatcagaaattcttgcattgaagtaatcatcaaggagtatgttctgaggctttatgtcacaatggatgat |
3070261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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