View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18615_low_1 (Length: 853)
Name: NF18615_low_1
Description: NF18615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18615_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 522; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 295 - 851
Target Start/End: Original strand, 44692796 - 44693353
Alignment:
| Q |
295 |
gcggtggaatcttcgtaggaggaatgccctccccccggaggtttcggttagatgtgtgttgtgcgaggaggaaatggaaagatctaatcacctttttgtg |
394 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
44692796 |
gcggtggaatcttcgtagaaggaatgccctccccccggaggtttcggttagatgtgtgttgtgcgaggaggaaatggaaatatctaatcacctttttgtg |
44692895 |
T |
|
| Q |
395 |
cattgtccggtggctagagggatttggttggagcttctcaagtgggttgatagtatgtttataatgccgcaaagtgtttttaatcattggttctgttgga |
494 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
44692896 |
cattgtccggtggctagagggatttggttggagcttctcaagtgggttgatagtatgtttataatgccgcaaagtgtttttaatcattggctctgttgga |
44692995 |
T |
|
| Q |
495 |
atgcgggagcctctaataagaagatgattaagggatttagactcatttggcacgcgacaatttgggtgatttggaaagcgagaaatgataagatatttaa |
594 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44692996 |
atgcgggagcctctaataagaagatgattaagggatttagactcatttggcacgcgacaatttgggtgatttggaaagcgagaaatgataagatatttaa |
44693095 |
T |
|
| Q |
595 |
tgacaaggtgaaggaagtgttggaaatcattga-gaggttaaagttttatcgtggaggtggtgcctatcccgccttaatataccggcctgcctttattat |
693 |
Q |
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|||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |
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| T |
44693096 |
tgacaaggtgaaggaagtgttggaaatcgttgaggaggttaaagttttatcgtggaggtggtgcctatccagccttaagataccggcctgcctttattat |
44693195 |
T |
|
| Q |
694 |
gagtgaagttggaatccgaagttgtgtctattgagatagttgtttttgtgctgtttggtttgtctgctgaaggtatcgttttctgtctggttttccttcg |
793 |
Q |
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| T |
44693196 |
gagtgaagttggaatccgaagttgtgtctattgagatagttgtttttgtgctgtttggtttgtctgctgaaggtatcgttttctgtctggttttccttcg |
44693295 |
T |
|
| Q |
794 |
ctggttgtctggttttcggggttgattccgtctcagtggtgctggatgttctgtgctg |
851 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44693296 |
ctagttgtctggttttcggggttgattccgtctcagtggtgctggatgttctgtgctg |
44693353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 44692458 - 44692758
Alignment:
| Q |
1 |
caaaccaaaaagaggctatggtggcgaatattggggtgaataatgggccggtggtggagtggcgnnnnnnngtgtgggaggaacaattgttaaataattt |
100 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
44692458 |
caaaccaaaaagaggctatggtggcgaatatgggggtgaataatgggccggtggtggagtggcgtttttttgtgtgggaggaacaattgttaaataattt |
44692557 |
T |
|
| Q |
101 |
attggaggatttggaggggcatgtgtggactcatggtgaagacgtttgggtttggaagcttgaagatgatgggaattttacggttaaatctatgtatggg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
44692558 |
attggaggatttggaggggcatgtgtggactcatggtgaagacgtttgggtttggaagcttgaagatgatgggaattttacagttaaatctatgtatggg |
44692657 |
T |
|
| Q |
201 |
gaagcttgaaggtagctggattgtggagaataggtggagtgtggaggagttgggagttttttctcaactttggaaaagcccggctccgtcaaaagcggtg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
44692658 |
gaagcttgaaggtagctggattgtggagaataggtggagtgtggaggagttgggagttttttctcaactttggaaaagcccggctccgtcaaaagtggtg |
44692757 |
T |
|
| Q |
301 |
g |
301 |
Q |
| |
|
| |
|
|
| T |
44692758 |
g |
44692758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 108; Significance: 9e-54; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 9e-54
Query Start/End: Original strand, 320 - 619
Target Start/End: Complemental strand, 34866371 - 34866072
Alignment:
| Q |
320 |
gccctccccccggaggtttcggttagatgtgtgttgtgcgaggaggaaatggaaagatctaatcacctttttgtgcattgtccggtggctagagggattt |
419 |
Q |
| |
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||||| || |||||||| ||||| || |||| || ||||||| || | ||||| ||| | |||||| || | ||||||| ||||||||||||||||| |
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| T |
34866371 |
gcccttcctccggaggtctcggtgaggtgtgctttatgcgaggttgagacggaaacatccattcacctcttcgcgcattgtatggtggctagagggattt |
34866272 |
T |
|
| Q |
420 |
ggttggagcttctcaagtgggttgatagtatgtttataatgccgcaaagtgtttttaatcattggttctgttggaatgcgggagcctctaataagaagat |
519 |
Q |
| |
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|||| || || || ||||||||||||| ||||||| | ||||| |||| |||||||||||||||||| |||||||||||||| |||||||||||||| | |
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| T |
34866271 |
ggttagaactccttaagtgggttgataatatgtttttgatgcctcaaaatgtttttaatcattggttgtgttggaatgcgggtgcctctaataagaaatt |
34866172 |
T |
|
| Q |
520 |
gattaagggatttagactcatttggcacgcgacaatttgggtgatttggaaagcgagaaatgataagatatttaatgacaaggtgaaggaagtgttggaa |
619 |
Q |
| |
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||||||||| ||||||||||||||||| || |||||||||| |||||||| ||| ||||||||||| ||||| ||||||| ||| || ||| ||||| |
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|
| T |
34866171 |
gattaagggttttagactcatttggcatgccgcaatttgggttatttggaagatgaggaatgataagatttttaacgacaaggagaaagaggtgatggaa |
34866072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 95 - 301
Target Start/End: Complemental strand, 34866639 - 34866434
Alignment:
| Q |
95 |
taatttattggaggatttggaggggcatgtgtggactcatggtgaagacgtttgggtttggaagcttgaagatgatgggaattttacggttaaatctatg |
194 |
Q |
| |
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|||||||||||| ||||||||||||||||||||| || | ||||||||| ||||| |||| | | ||||| || ||||| || ||||| ||||||||| |
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| T |
34866639 |
taatttattggaagatttggaggggcatgtgtggtctaacggtgaagacagatgggtgtggaggatggaagacgaagggaaattcacggtgaaatctatg |
34866540 |
T |
|
| Q |
195 |
tatggggaagcttgaaggtagctggattgtggagaataggtggagtgtggaggagttgggagttttttctcaactttggaaaagcccggctccgtcaaaa |
294 |
Q |
| |
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|||| | ||| ||||||| || |||||||||||||| | |||||||||||||||||| |||| ||| |||||||||||||||||||| || |||||| |
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| T |
34866539 |
tatgcg-aagtttgaagggagatggattgtggagaacaattggagtgtggaggagttgagagtgtttctccaactttggaaaagcccggccccctcaaaa |
34866441 |
T |
|
| Q |
295 |
gcggtgg |
301 |
Q |
| |
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| ||||| |
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|
| T |
34866440 |
gtggtgg |
34866434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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