View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18615_low_2 (Length: 716)

Name: NF18615_low_2
Description: NF18615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18615_low_2
NF18615_low_2
[»] chr4 (13 HSPs)
chr4 (146-401)||(21228591-21228846)
chr4 (400-577)||(21228389-21228566)
chr4 (588-699)||(7885275-7885386)
chr4 (400-549)||(7884922-7885071)
chr4 (33-145)||(7884074-7884190)
chr4 (29-144)||(10035872-10035991)
chr4 (610-700)||(4320525-4320615)
chr4 (627-700)||(6753045-6753118)
chr4 (628-700)||(6651152-6651224)
chr4 (627-682)||(6758827-6758882)
chr4 (186-245)||(10035699-10035758)
chr4 (634-700)||(4123869-4123935)
chr4 (627-700)||(6545371-6545444)
[»] chr7 (3 HSPs)
chr7 (588-699)||(18935472-18935583)
chr7 (588-692)||(34724470-34724574)
chr7 (400-486)||(34724090-34724176)
[»] chr6 (5 HSPs)
chr6 (636-699)||(5102546-5102609)
chr6 (628-699)||(5243837-5243908)
chr6 (634-685)||(5344961-5345012)
chr6 (610-695)||(5096798-5096883)
chr6 (634-699)||(5073838-5073903)
[»] chr8 (1 HSPs)
chr8 (634-700)||(31175932-31175998)
[»] scaffold0813 (1 HSPs)
scaffold0813 (628-700)||(4750-4822)
[»] chr5 (1 HSPs)
chr5 (633-688)||(8877706-8877761)
[»] chr3 (1 HSPs)
chr3 (634-703)||(32411133-32411202)


Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 146 - 401
Target Start/End: Complemental strand, 21228846 - 21228591
Alignment:
Q  146 aatagcgcaacaatatgacccagctaattgactcttgagacaaacttttacattacaccactgaataatattttgtagaatgcaaaactaaacaatccaa 245  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  21228846 aatagcacaacaatatgacccagctaattgactcttgagacaaacttttacattacaccactgaataatattttgtagaatgcaaaactaaacaatccat 21228747  T
Q  246 ccatccattttgaaagttcttataaggtgtttcaagtttacaatattccattcaaatcaattactatataatactttatcagattacttgattttaacaa 345  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  21228746 ccatccattttgaaagttcttataaggtgtttcaagtttacaatattccattcaaatcaattactatataatactttatcagattacttgattttaacta 21228647  T
Q  346 tagatgtttgatatataaacaaacaaacatagagaggtttgtgtttggacatgtaa 401  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  21228646 tagatgtttgatatataaacaaacaaacatagtgaggtttgtgtttggacaagtaa 21228591  T

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Target: chr4; HSP #2
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 400 - 577
Target Start/End: Complemental strand, 21228566 - 21228389
Alignment:
Q  400 aaaatattttctgtaagaatgttggtgacatcgcagctcattcccacttgaatcaaaagggatgtcaaggaactttttgagcttgaaatacaaacttgac 499  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21228566 aaaatattttctgtaagaatgttggtgacatcgcagctcattcccatttgaatcaaaagggatgtcaaggaactttttgagcttgaaatacaaacttgac 21228467  T
Q  500 tgtgacaatcaattgatgtcgaagtcccgatatttgagaatccctcacaaatacttgccacagtttgattcaattgag 577  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  21228466 tgtgacaatcaattgatgtccaagtcccgatatttgagaatccctcacaaatacttgctacagtttgattcaattgag 21228389  T

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Target: chr4; HSP #3
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 588 - 699
Target Start/End: Original strand, 7885275 - 7885386
Alignment:
Q  588 tggagacaacaaagactgaataatagaaggaaacactctacgtgcaaatccttcatagccacagagagaaatatatgcaatgcttttttatcttactaat 687  Q
    |||||||| | ||||||||||||||||||||||||||||||||||| |||||| ||| ||||| ||||||||| |||||||||||||| ||||||||| |    
T  7885275 tggagacagccaagactgaataatagaaggaaacactctacgtgcagatcctttataaccacatagagaaataaatgcaatgctttttgatcttactact 7885374  T
Q  688 gcaaagggcact 699  Q
    ||||||||||||    
T  7885375 gcaaagggcact 7885386  T

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Target: chr4; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 400 - 549
Target Start/End: Original strand, 7884922 - 7885071
Alignment:
Q  400 aaaatattttctgtaagaatgttggtgacatcgcagctcattcccacttgaatcaaaagggatgtcaaggaactttttgagcttgaaatacaaacttgac 499  Q
    |||||||||||| |||||||||| | |||||||||||||| ||||| || |||||||||||| || |  ||| |||||||||| |||||||||||||||     
T  7884922 aaaatattttctctaagaatgtttgcgacatcgcagctcactcccatttcaatcaaaagggaagttactgaattttttgagctggaaatacaaacttgag 7885021  T
Q  500 tgtgacaatcaattgatgtcgaagtcccgatatttgagaatccctcacaa 549  Q
    || ||| |  | ||||||  |||||| | |||||||||||||||||||||    
T  7885022 tgcgacgaaaatttgatgctgaagtctcaatatttgagaatccctcacaa 7885071  T

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Target: chr4; HSP #5
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 33 - 145
Target Start/End: Original strand, 7884074 - 7884190
Alignment:
Q  33 acttacattttcatcacgactagaaacaatgccattgacatctgcctcatgtcagtgcttcgtctttccgtcaattggttcatcatataca----aaatt 128  Q
    ||||||||||||||||| |||||| |||||||||||  |||||| |||||| ||||| ||||||||| | ||||||||||||||||| |||    |||||    
T  7884074 acttacattttcatcaccactagacacaatgccattctcatctggctcatggcagtggttcgtcttttcctcaattggttcatcatagacaagataaatt 7884173  T
Q  129 gttgtcttcttcacaat 145  Q
    ||||| |||||||||||    
T  7884174 gttgttttcttcacaat 7884190  T

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Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 144
Target Start/End: Complemental strand, 10035991 - 10035872
Alignment:
Q  29 tattacttacattttcatcacgactagaaacaatgccattgacatct-gcctcatgtcagtgcttcgtctttccgtcaattggttcatcatataca---- 123  Q
    ||||||||||||||||||||| || ||| |||||||||||  ||||| | ||||||  |||||||| ||||| | |||||| ||||||||||||||        
T  10035991 tattacttacattttcatcaccac-agagacaatgccattctcatctaggctcatggaagtgcttcatcttttcatcaatttgttcatcatatacaagat 10035893  T
Q  124 aaattgttgtcttcttcacaa 144  Q
    ||||||||||| |||||||||    
T  10035892 aaattgttgtcatcttcacaa 10035872  T

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Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 610 - 700
Target Start/End: Original strand, 4320525 - 4320615
Alignment:
Q  610 atagaaggaaacactctacgtgcaaatccttcatagccacagagagaaatatatgcaatgcttttttatcttactaatgcaaagggcactt 700  Q
    ||||||||||||||   |||||  ||||||||||| ||||| ||||||||| || ||||||||||| | |||||||||| |||||| ||||    
T  4320525 atagaaggaaacacatcacgtgagaatccttcatatccacacagagaaataaatccaatgctttttgaccttactaatgaaaagggaactt 4320615  T

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Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 627 - 700
Target Start/End: Complemental strand, 6753118 - 6753045
Alignment:
Q  627 acgtgcaaatccttcatagccacagagagaaatatatgcaatgcttttttatcttactaatgcaaagggcactt 700  Q
    ||||| |||||||||| ||||||  | |||||||||| ||||||||||  ||||||||| || |||||||||||    
T  6753118 acgtgaaaatccttcaaagccacgaaaagaaatatatccaatgcttttcaatcttactattgaaaagggcactt 6753045  T

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Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 628 - 700
Target Start/End: Complemental strand, 6651224 - 6651152
Alignment:
Q  628 cgtgcaaatccttcatagccacagagagaaatatatgcaatgcttttttatcttactaatgcaaagggcactt 700  Q
    |||| |||||||||| ||||||| |||||||||||| ||||| || || ||||||||| || ||| |||||||    
T  6651224 cgtgaaaatccttcaaagccacatagagaaatatatccaatgtttcttaatcttactattgaaaacggcactt 6651152  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 627 - 682
Target Start/End: Complemental strand, 6758882 - 6758827
Alignment:
Q  627 acgtgcaaatccttcatagccacagagagaaatatatgcaatgcttttttatctta 682  Q
    |||||||||||||||| ||||||| ||||||||| ||  |||||||||| ||||||    
T  6758882 acgtgcaaatccttcaaagccacacagagaaataaatctaatgctttttaatctta 6758827  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 245
Target Start/End: Complemental strand, 10035758 - 10035699
Alignment:
Q  186 caaacttttacattacaccactgaataatattttgtagaatgcaaaactaaacaatccaa 245  Q
    ||||||||||||||||||||  ||||||||  |||||||||||||| | || ||||||||    
T  10035758 caaacttttacattacaccagcgaataataaattgtagaatgcaaaccgaaccaatccaa 10035699  T

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Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 634 - 700
Target Start/End: Original strand, 4123869 - 4123935
Alignment:
Q  634 aatccttcatagccacagagagaaatatatgcaatgcttttttatcttactaatgcaaagggcactt 700  Q
    ||||||||||| ||||| ||||||||| || ||||||||||| | |||||||  | |||||||||||    
T  4123869 aatccttcatatccacacagagaaataaatccaatgctttttgaccttactaccgaaaagggcactt 4123935  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 627 - 700
Target Start/End: Original strand, 6545371 - 6545444
Alignment:
Q  627 acgtgcaaatccttcatagccacagagagaaatatatgcaatgcttttttatcttactaatgcaaagggcactt 700  Q
    ||||| |||||||||| ||||||  | |||||||||| ||||||||||  |||| |||| || |||||||||||    
T  6545371 acgtgaaaatccttcaaagccacgaaaagaaatatatccaatgcttttcaatctaactattgaaaagggcactt 6545444  T

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Target: chr7 (Bit Score: 56; Significance: 8e-23; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 588 - 699
Target Start/End: Complemental strand, 18935583 - 18935472
Alignment:
Q  588 tggagacaacaaagactgaataatagaaggaaacactctacgtgcaaatccttcatagccacagagagaaatatatgcaatgcttttttatcttactaat 687  Q
    |||||||| | ||||||||||||| |||||||||||  ||||||| ||||||||| | ||||| || |||||| || ||||||||||| ||||||||| |    
T  18935583 tggagacatccaagactgaataattgaaggaaacacattacgtgctaatccttcaaatccacacagtgaaataaatccaatgctttttgatcttactact 18935484  T
Q  688 gcaaagggcact 699  Q
    ||||||||||||    
T  18935483 gcaaagggcact 18935472  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 588 - 692
Target Start/End: Original strand, 34724470 - 34724574
Alignment:
Q  588 tggagacaacaaagactgaataatagaaggaaacactctacgtgcaaatccttcatagccacagagagaaatatatgcaatgcttttttatcttactaat 687  Q
    |||||||| | ||||||||||||| ||||| |||||  ||||||||||||||||| | ||||| || |||||| || ||||||||||| ||||||||| |    
T  34724470 tggagacatccaagactgaataattgaagggaacacattacgtgcaaatccttcaaatccacaaagtgaaataaatccaatgctttttgatcttactact 34724569  T
Q  688 gcaaa 692  Q
    |||||    
T  34724570 gcaaa 34724574  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 400 - 486
Target Start/End: Original strand, 34724090 - 34724176
Alignment:
Q  400 aaaatattttctgtaagaatgttggtgacatcgcagctcattcccacttgaatcaaaagggatgtcaaggaactttttgagcttgaa 486  Q
    ||||| |||||| ||||| | || ||||||  |||| ||||||| | |||||| ||||| |||||||||||| ||| ||||||||||    
T  34724090 aaaatgttttctttaagagtattagtgacacggcagttcattccaatttgaataaaaagtgatgtcaaggaattttgtgagcttgaa 34724176  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000007; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 636 - 699
Target Start/End: Original strand, 5102546 - 5102609
Alignment:
Q  636 tccttcatagccacagagagaaatatatgcaatgcttttttatcttactaatgcaaagggcact 699  Q
    ||||||||||||||| ||||| |||||| ||||||||||| | ||||||| || ||||||||||    
T  5102546 tccttcatagccacatagagagatatatccaatgctttttgaccttactactgaaaagggcact 5102609  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 628 - 699
Target Start/End: Original strand, 5243837 - 5243908
Alignment:
Q  628 cgtgcaaatccttcatagccacagagagaaatatatgcaatgcttttttatcttactaatgcaaagggcact 699  Q
    |||| |||||||||||||||||| | |||||||||| | ||||||||| | ||||||| || ||||||||||    
T  5243837 cgtgaaaatccttcatagccacacaaagaaatatatccgatgctttttgaccttactactgaaaagggcact 5243908  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 634 - 685
Target Start/End: Complemental strand, 5345012 - 5344961
Alignment:
Q  634 aatccttcatagccacagagagaaatatatgcaatgcttttttatcttacta 685  Q
    ||||||||||||||||| |||||||||||| ||||||||||| | |||||||    
T  5345012 aatccttcatagccacacagagaaatatatccaatgctttttgaccttacta 5344961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 610 - 695
Target Start/End: Complemental strand, 5096883 - 5096798
Alignment:
Q  610 atagaaggaaacactctacgtgcaaatccttcatagccacagagagaaatatatgcaatgcttttttatcttactaatgcaaaggg 695  Q
    ||||| ||||||||   ||||| ||||||||||| |||||| |||||||| ||| ||||||||||| | ||||||| || ||||||    
T  5096883 atagacggaaacacatcacgtgaaaatccttcatggccacatagagaaatgtatccaatgctttttgaccttactactgaaaaggg 5096798  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 634 - 699
Target Start/End: Original strand, 5073838 - 5073903
Alignment:
Q  634 aatccttcatagccacagagagaaatatatgcaatgcttttttatcttactaatgcaaagggcact 699  Q
    |||||||||||||| || | |||||||||| ||||||||||  | ||||||| || ||||||||||    
T  5073838 aatccttcatagccgcacaaagaaatatatccaatgcttttcgaccttactactgaaaagggcact 5073903  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 634 - 700
Target Start/End: Complemental strand, 31175998 - 31175932
Alignment:
Q  634 aatccttcatagccacagagagaaatatatgcaatgcttttttatcttactaatgcaaagggcactt 700  Q
    ||||||||||| ||||| ||||| |||||||||||||||||| ||||| ||| || | |||||||||    
T  31175998 aatccttcatatccacatagagatatatatgcaatgctttttgatcttgctattgaatagggcactt 31175932  T

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Target: scaffold0813 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0813
Description:

Target: scaffold0813; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 628 - 700
Target Start/End: Original strand, 4750 - 4822
Alignment:
Q  628 cgtgcaaatccttcatagccacagagagaaatatatgcaatgcttttttatcttactaatgcaaagggcactt 700  Q
    |||| |||||||||| ||||||| |||||||||||| ||||| || || ||||||||| || ||| |||||||    
T  4750 cgtgaaaatccttcaaagccacatagagaaatatatccaatgtttcttaatcttactattgaaaacggcactt 4822  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 633 - 688
Target Start/End: Complemental strand, 8877761 - 8877706
Alignment:
Q  633 aaatccttcatagccacagagagaaatatatgcaatgcttttttatcttactaatg 688  Q
    ||||||||||||||| || | |||||||||| ||||||||||| | ||||||||||    
T  8877761 aaatccttcatagccgcacaaagaaatatatccaatgctttttgaccttactaatg 8877706  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 634 - 703
Target Start/End: Original strand, 32411133 - 32411202
Alignment:
Q  634 aatccttcatagccacagagagaaatatatgcaatgcttttttatcttactaatgcaaagggcacttctt 703  Q
    ||||||||||| ||||| ||||| |||||||| ||||||||  ||||||||| || | ||||||| ||||    
T  32411133 aatccttcatatccacatagagatatatatgcgatgcttttcgatcttactattgaacagggcacctctt 32411202  T

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