View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18615_low_3 (Length: 509)
Name: NF18615_low_3
Description: NF18615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18615_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 375; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 18 - 432
Target Start/End: Original strand, 50162967 - 50163382
Alignment:
| Q |
18 |
actatgagcagttttgcgagattcacttttctatttagttatgtttttgcatgtgaatctttaatttttgtgtgtattagtgtagcgtagaatgttctaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50162967 |
actatgagcagttttgcgagattcacttttctatttagttatgtttttgcatgtgaatctttcatttttgtgtgtattagtgtagcgtagaatgttctaa |
50163066 |
T |
|
| Q |
118 |
gatctattggattactgctaaacaagttaagtaactactagttggttatattgcgattatttagctaaagtattgatatgataagctgataatcgaagnn |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50163067 |
gatctattggattactgctaaacaagttaagtaactactagttggttatattgcgattatttagctaaagtattgatatgataagctgataatcgaagtt |
50163166 |
T |
|
| Q |
218 |
nnnnnattgtataatttatagtttatggtgactaattagccattcacactgctacatcatcattgttg-ccctttttgtgtgtgtggtcagtaagctcac |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
50163167 |
tttttattgtataatttatagtttatggtgactaattagccattcacactgcgacatcatcattgttgcccctttttgtgtgtgtggtcagtaagctcac |
50163266 |
T |
|
| Q |
317 |
ctaaagcgataacggttcaatgagcctttttcagtgaaactgctccattgtgagcatttgagggttcactgggccgctacactgaactacatttcacaac |
416 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50163267 |
ctaaagcgataaaggttcaatgagcctttttcagtgaaactgctccattgtgagcatttgagggttcactgggccgctacactgaactacatttcacaac |
50163366 |
T |
|
| Q |
417 |
gctgtcactgggaata |
432 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
50163367 |
gctgtcactgggaata |
50163382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 232 - 413
Target Start/End: Original strand, 50163685 - 50163862
Alignment:
| Q |
232 |
tttatagtttatggtgactaattagccattcacactgctacatcatcattgttgccctttttgtgtgtgtggtcagtaagctcacctaaagcgataacgg |
331 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || |||| ||| | || |||| || |||||||||||||||||||||| ||||||| | |
|
|
| T |
50163685 |
tttatagtttatggtgactaattagccattcacactgcaacttcattgttgctccc----ttgtttgcgtggtcagtaagctcacctaaatcgataactg |
50163780 |
T |
|
| Q |
332 |
ttcaatgagcctttttcagtgaaactgctccattgtgagcatttgagggttcactgggccgctacactgaactacatttcac |
413 |
Q |
| |
|
||| |||||||||| |||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||| |
|
|
| T |
50163781 |
ttcgatgagcctttactagtgaaactgctccattgtgagcatttgagggttcactagattgctctactgaactacatttcac |
50163862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 234 - 346
Target Start/End: Original strand, 50162788 - 50162896
Alignment:
| Q |
234 |
tatagtttatggtgactaattagccattcacactgctacatcatcattgttgccctttttgtgtgtgtggtcagtaagctcacctaaagcgataacggtt |
333 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| || | ||| |||||| | ||||||||||||||||||||||||||||| | ||||||| ||| |
|
|
| T |
50162788 |
tatagtttatggtgactaattagccattcatactg---caacttcactgttgctc-atttgtgtgtgtggtcagtaagctcacctatatcgataactgtt |
50162883 |
T |
|
| Q |
334 |
caatgagcctttt |
346 |
Q |
| |
|
|||||| |||| |
|
|
| T |
50162884 |
tgatgagcatttt |
50162896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University