View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18615_low_7 (Length: 383)
Name: NF18615_low_7
Description: NF18615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18615_low_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 20 - 376
Target Start/End: Original strand, 55896200 - 55896556
Alignment:
| Q |
20 |
ttttgggcttccactggcttgtggaatagccaccaaagcttgtgctccgatcatggcagggtcaagattgctgcttggattgatggcccaagcaacccac |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
55896200 |
ttttgggcttccactggcttgtggaatagccaccaaagcttgtgctccgatcatggctgggtcaagatttctgcttggattgatggcccaagcaacccac |
55896299 |
T |
|
| Q |
120 |
ctatttgttgcagttattccagtatgtatgtatgctatgtctaatttgccacttgtttcatcgtatgaccagtggaggtacgaggttaactgtggaagat |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55896300 |
ctatttgttgcagttattccagtatgtatgtatgctatgtctaatttgccacttgtttcatcgtatgaccagtggaggtacgaggttaactgtggaagat |
55896399 |
T |
|
| Q |
220 |
cacgacatgttgtgaacgctctgttgtctgagaatgtttggtttttacaagattgagtttgagctgaggatgtcaaaattatgctactcaaaacacacaa |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55896400 |
cacgacatgttgtgaacgctctgttgtctgagaatgtttggtttttacaagattgagtttgagctgaggatgtcaaaattatgctactcaaaacacacaa |
55896499 |
T |
|
| Q |
320 |
ggccaacgtaagcctcaacatgatggtgctaaaattgtctcctccttccctttgctt |
376 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55896500 |
ggccaacgtaagcctcaacatgatggtgctaaaattgtctcctccttccctttgctt |
55896556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 20 - 233
Target Start/End: Complemental strand, 1028763 - 1028550
Alignment:
| Q |
20 |
ttttgggcttccactggcttgtggaatagccaccaaagcttgtgctccgatcatggcagggtcaagattgctgcttggattgatggcccaagcaacccac |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1028763 |
ttttgggcttccactggcttgtggaatagccaccaaagcttgtgctccgatcatggccgggtcaagattgctgcttggattgatggcccaagcaacccac |
1028664 |
T |
|
| Q |
120 |
ctatttgttgcagttattccagtatgtatgtatgctatgtctaatttgccacttgtttcatcgtatgaccagtggaggtacgaggttaactgtggaagat |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1028663 |
ctatttgttgcagttattccagtatgtatgtatgctatgtctaatttgccacttgtttcatcgtatgaccagtggaggtacgaggttaactgtggaagat |
1028564 |
T |
|
| Q |
220 |
cacgacatgttgtg |
233 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
1028563 |
cacgacatgttgtg |
1028550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 235
Target Start/End: Original strand, 9413856 - 9413940
Alignment:
| Q |
151 |
atgctatgtctaatttgccacttgtttcatcgtatgaccagtggaggtacgaggttaactgtggaagatcacgacatgttgtgaa |
235 |
Q |
| |
|
|||||||||| | ||| || |||||| ||||||| ||||||||| |||||||| | ||||| ||||||||||||| |||||| |
|
|
| T |
9413856 |
atgctatgtcgagttttcctgttgtttggtcgtatgtccagtggagatacgaggtgagttgtggtagatcacgacatgatgtgaa |
9413940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University