View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18615_low_8 (Length: 368)
Name: NF18615_low_8
Description: NF18615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18615_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 362
Target Start/End: Complemental strand, 50255874 - 50255513
Alignment:
| Q |
1 |
tcatcatctcaggtgctgaaaatatcagcagtgtagaggtagagaatgctctgtactcgcatcctgctatacttgagacatcagtggtcgctagaccaga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50255874 |
tcatcatctcaggtgctgaaaatatcagcagtgtagaggtagagaatgctctgtactcgcatcctgctatacttgagacatcagtggtcgctagaccaga |
50255775 |
T |
|
| Q |
101 |
cgagaaatggggcgagtctccgtgtgcgtttgtgacattaaagccaggagtggataggagtaacgagcaacgtctagtcgaggacatactgaagttctgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50255774 |
cgagaaatggggcgagtctccgtgtgcgtttgtgacattaaagccaggagtggataggagtaacgagcaacgtctagtcgaggacatactgaagttctgt |
50255675 |
T |
|
| Q |
201 |
agggccaagatgcctacttattgggtaccgaaatcagttgtctttggaccgttacctaagacagctactgggaaggtacagaagcatctgctgagggcta |
300 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50255674 |
agggccaagatgcctacttattgggtaccgaaatcggttgtctttggaccgttacctaagacagctactgggaaggtacagaagcatctgctgagggcta |
50255575 |
T |
|
| Q |
301 |
aggcaaaggagatgggacctctcaagatgagcaagttgtaatcatattagagtgatgatgtc |
362 |
Q |
| |
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| T |
50255574 |
aggcaaaggagatgggacctctcaagacgagcaagttgtaatcatattagagtgataatgtc |
50255513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 132; Significance: 2e-68; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 6 - 345
Target Start/End: Original strand, 19213661 - 19214000
Alignment:
| Q |
6 |
atctcaggtgctgaaaatatcagcagtgtagaggtagagaatgctctgtactcgcatcctgctatacttgagacatcagtggtcgctagaccagacgaga |
105 |
Q |
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|||||||||| ||||||||| ||||||||||| |||||| | || ||||||| |||| ||| ||| | || |||||||||| || || ||||| |||| |
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| T |
19213661 |
atctcaggtggtgaaaatattagcagtgtagaaatagagagtactttgtactcacatcatgcaatattggaagcatcagtggttgcaaggccagatgaga |
19213760 |
T |
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| Q |
106 |
aatggggcgagtctccgtgtgcgtttgtgacattaaagccaggagtggataggagtaacgagcaacgtctagtcgaggacatactgaagttctgtagggc |
205 |
Q |
| |
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||||||| |||||||| ||||| |||||||||||||||||| |||||||||| ||||| || | || |||| ||||| ||| ||| || |||| ||| |
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| T |
19213761 |
aatggggtgagtctccatgtgcatttgtgacattaaagccaagagtggatagtagtaatgaaaagtgtttagttgaggatatattgagtttttgtaaggc |
19213860 |
T |
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| Q |
206 |
caagatgcctacttattgggtaccgaaatcagttgtctttggaccgttacctaagacagctactgggaaggtacagaagcatctgctgagggctaaggca |
305 |
Q |
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|||||| || ||||| ||| || ||||||||||| |||||||| |||||||||||||||||||||||| |||||||| ||||| |||||||||||||| |
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| T |
19213861 |
taagatgtcttcttatatggtcccaaaatcagttgtgtttggaccattacctaagacagctactgggaagatacagaagaatctgttgagggctaaggca |
19213960 |
T |
|
| Q |
306 |
aaggagatgggacctctcaagatgagcaagttgtaatcat |
345 |
Q |
| |
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||||||||||| || ||||||||||||||||||||||| |
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| T |
19213961 |
aaggagatggggtctgccaagatgagcaagttgtaatcat |
19214000 |
T |
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