View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18616_high_1 (Length: 593)
Name: NF18616_high_1
Description: NF18616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18616_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-135; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 166 - 426
Target Start/End: Original strand, 4709249 - 4709509
Alignment:
| Q |
166 |
tgtgttttggcggtgttaacatttcactgggtgaccttatctacttcgaatgtatttgattgttttaatttttgggttaactatacctacgactaatact |
265 |
Q |
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| T |
4709249 |
tgtgttttggcggtgttaacatttcactgggcgaccttatatacttcaaatgtatttgattgttttaatttttgggttaactatacctacgactaatact |
4709348 |
T |
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| Q |
266 |
tttctccataggtatagcttttctatacctacgatttaaaatccgtcactataaacctccgttggcatatgccattttcttgcagtagtaattggacaaa |
365 |
Q |
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| T |
4709349 |
tttctccataggtatagcttttctatacctactatttaaaatccgtcactataaacctccgttggcatatgccattttcttgcagtagtaattggacaaa |
4709448 |
T |
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| Q |
366 |
catatataatcaacatcaattgcttgaaagacaaatgcgttactcatcgaagtggagatgg |
426 |
Q |
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| T |
4709449 |
catatataatcaacatcaattgcttgaaagacaaatgcgttactcatcgaagtggagatgg |
4709509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 509 - 578
Target Start/End: Original strand, 4709593 - 4709662
Alignment:
| Q |
509 |
aatattgacttgtttctttaaagttgtcccgtctnnnnnnnncaatcaacctaatctctccccaaaaata |
578 |
Q |
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| T |
4709593 |
aatattgacttgtttctttaaagttgtcccgtctaaaaaaaacaatcaacctaatctctccccaaaaata |
4709662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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