View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18616_high_16 (Length: 240)
Name: NF18616_high_16
Description: NF18616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18616_high_16 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 8 - 223
Target Start/End: Complemental strand, 29063054 - 29062839
Alignment:
| Q |
8 |
cgagtgagatgaagagggaggagttttcctttgtagaagagatcatcagcaggggtagttttggaannnnnnncatttgagatagaactactcatttgga |
107 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
29063054 |
cgagggaggtgaagagggaggagttttcctttgtagaagagatcatcagcaggggtagttttggaatttttttcatttgagatagaactactcatttgga |
29062955 |
T |
|
| Q |
108 |
attcaaactctctggtattctttggtggagaaccaaaagaataagagaagaagtgtgagggagaacatagttccatgtcaatgtagtcttcatctacatg |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29062954 |
attcaaactctctggtattctttggtggagaaccaaaagaataagagaagaagtgtgagggagaacatagttccatgtcaatgtagtcttcatctacatg |
29062855 |
T |
|
| Q |
208 |
aaccaaagtgacttgt |
223 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
29062854 |
aaccaaagtgacttgt |
29062839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 52287744 - 52287784
Alignment:
| Q |
17 |
tgaagagggaggagttttcctttgtagaagagatcatcagc |
57 |
Q |
| |
|
||||| ||||||||||||||||||||||| || |||||||| |
|
|
| T |
52287744 |
tgaagggggaggagttttcctttgtagaaaagctcatcagc |
52287784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University