View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18616_high_17 (Length: 227)
Name: NF18616_high_17
Description: NF18616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18616_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 7 - 208
Target Start/End: Complemental strand, 34917120 - 34916919
Alignment:
| Q |
7 |
ggacatcatcaaaatcacaagttggtaccaaacactgatcattgggaaaaaattgttcagtttgttgagactgagaggatattgttgtgcttctgttggt |
106 |
Q |
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| T |
34917120 |
ggacatcatcaaaatcacaagttggtaccaaacactgatcattgggaaaaaattgttcagtttgttgagactgagaggatattgttgtgcttctgttggt |
34917021 |
T |
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| Q |
107 |
tttgttctttatagcattagctgaaggttttcttctataatctttcggagggttttcgtctaggtttaagctcttgatatatttttgtagaagagttcct |
206 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34917020 |
tttgttttttatagcattagctgaaggttttcttctataatctttcggaggattttcgtctaggtttaagctcttgatatatttttgtagaagagttcct |
34916921 |
T |
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| Q |
207 |
tt |
208 |
Q |
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|| |
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| T |
34916920 |
tt |
34916919 |
T |
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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 202
Target Start/End: Original strand, 21549495 - 21549574
Alignment:
| Q |
123 |
ttagctgaaggttttcttctataatctttcggagggttttcgtctaggtttaagctcttgatatatttttgtagaagagt |
202 |
Q |
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|||| ||||| ||||||| |||| ||||| || || |||| ||||| ||| |||||||||||||||| |||||||||||| |
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| T |
21549495 |
ttagttgaagattttcttgtatactcttttgggggatttttgtctaagttcaagctcttgatatattcttgtagaagagt |
21549574 |
T |
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