View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18616_high_9 (Length: 361)

Name: NF18616_high_9
Description: NF18616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18616_high_9
NF18616_high_9
[»] chr6 (8 HSPs)
chr6 (255-351)||(18299874-18299970)
chr6 (185-253)||(3418990-3419058)
chr6 (185-252)||(29968710-29968777)
chr6 (193-253)||(19292943-19293003)
chr6 (179-252)||(10172510-10172584)
chr6 (185-259)||(19078972-19079045)
chr6 (179-226)||(26229227-26229273)
chr6 (209-253)||(19079229-19079273)
[»] chr7 (16 HSPs)
chr7 (179-254)||(44970070-44970145)
chr7 (185-260)||(15234915-15234990)
chr7 (185-254)||(1076072-1076141)
chr7 (209-253)||(11907776-11907820)
chr7 (185-253)||(44945004-44945071)
chr7 (185-250)||(17756574-17756638)
chr7 (185-253)||(21809301-21809368)
chr7 (209-253)||(49017059-49017103)
chr7 (51-160)||(1075938-1076047)
chr7 (193-254)||(4038362-4038423)
chr7 (209-254)||(27400247-27400292)
chr7 (185-253)||(36723894-36723963)
chr7 (51-92)||(43080041-43080082)
chr7 (51-91)||(17756734-17756774)
chr7 (185-245)||(26942262-26942322)
chr7 (51-91)||(36724057-36724097)
[»] chr5 (6 HSPs)
chr5 (185-260)||(17549143-17549218)
chr5 (185-253)||(4428887-4428955)
chr5 (185-253)||(31736902-31736969)
chr5 (185-227)||(37101825-37101867)
chr5 (193-253)||(37022978-37023038)
chr5 (185-252)||(14028303-14028370)
[»] scaffold0001 (1 HSPs)
scaffold0001 (185-254)||(181480-181549)
[»] chr4 (6 HSPs)
chr4 (185-251)||(8823596-8823662)
chr4 (179-255)||(16204738-16204814)
chr4 (185-250)||(45071008-45071071)
chr4 (185-256)||(42841999-42842068)
chr4 (209-254)||(35187645-35187690)
chr4 (185-253)||(27993727-27993795)
[»] chr2 (5 HSPs)
chr2 (185-254)||(43822902-43822971)
chr2 (185-248)||(13284270-13284333)
chr2 (51-92)||(32164793-32164834)
chr2 (185-253)||(7497030-7497097)
chr2 (51-91)||(13764742-13764782)
[»] chr3 (8 HSPs)
chr3 (185-252)||(42641928-42641995)
chr3 (185-253)||(8541097-8541165)
chr3 (185-253)||(47278341-47278408)
chr3 (51-129)||(43410238-43410317)
chr3 (185-255)||(25644575-25644645)
chr3 (185-222)||(47099852-47099889)
chr3 (209-253)||(27813512-27813556)
chr3 (51-92)||(47099984-47100025)
[»] chr1 (10 HSPs)
chr1 (179-253)||(1787322-1787393)
chr1 (185-255)||(4198200-4198269)
chr1 (185-254)||(36565779-36565848)
chr1 (196-253)||(46671531-46671588)
chr1 (185-253)||(25160642-25160709)
chr1 (209-254)||(16632324-16632369)
chr1 (209-254)||(43671450-43671495)
chr1 (209-253)||(3712508-3712552)
chr1 (51-91)||(4198364-4198404)
chr1 (51-91)||(41502972-41503012)
[»] scaffold0648 (1 HSPs)
scaffold0648 (185-254)||(4582-4651)
[»] scaffold0274 (1 HSPs)
scaffold0274 (185-254)||(4052-4121)
[»] chr8 (3 HSPs)
chr8 (202-249)||(19779875-19779921)
chr8 (193-255)||(37044966-37045028)
chr8 (185-253)||(7011315-7011382)
[»] scaffold0006 (1 HSPs)
scaffold0006 (209-253)||(230291-230335)


Alignment Details
Target: chr6 (Bit Score: 81; Significance: 5e-38; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 255 - 351
Target Start/End: Original strand, 18299874 - 18299970
Alignment:
Q  255 ttccaaccacaatgagtcacaaacgcacctatggagtcatgactcagtacattcatttgtggggcccaatccttcaccacttttcctttctcctttg 351  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  18299874 ttccaaccacaatgagtcacaaacgcgcctttggagtcatgactcagtaccttcacttgtggggcccaatccttcaccacttttcctttctcctttg 18299970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 185 - 253
Target Start/End: Complemental strand, 3419058 - 3418990
Alignment:
Q  185 aatatgaaatttatataaaaactagggggtgcagtggcacctgtgagtctctgaagagatccgcccctg 253  Q
    ||||||||||||||||||||||| ||||||||||||||| ||| | |||||  ||||||||||||||||    
T  3419058 aatatgaaatttatataaaaactggggggtgcagtggcatctgggggtctccaaagagatccgcccctg 3418990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 185 - 252
Target Start/End: Original strand, 29968710 - 29968777
Alignment:
Q  185 aatatgaaatttatataaaaactagggggtgcagtggcacctgtgagtctctgaagagatccgcccct 252  Q
    ||||||| ||||||||||||  | ||||||||||||||||||| | |||||| |||||||||||||||    
T  29968710 aatatgatatttatataaaagttggggggtgcagtggcacctgggggtctctaaagagatccgcccct 29968777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 193 - 253
Target Start/End: Original strand, 19292943 - 19293003
Alignment:
Q  193 atttatataaaaactagggggtgcagtggcacctgtgagtctctgaagagatccgcccctg 253  Q
    |||||||||||   | ||||||||||||||||||| | |||||||||||||||||||||||    
T  19292943 atttatataaatgttggggggtgcagtggcacctgggggtctctgaagagatccgcccctg 19293003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 252
Target Start/End: Complemental strand, 10172584 - 10172510
Alignment:
Q  179 atgcacaatatgaaatttatataaaaactagggggtgcagtggcacctgtga-gtctctgaagagatccgcccct 252  Q
    ||||| ||||| ||||||||||| ||| | | ||||||||||||||||| || |||||||||||||| |||||||    
T  10172584 atgcataatataaaatttatatataaattggagggtgcagtggcacctgggaggtctctgaagagattcgcccct 10172510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 259
Target Start/End: Original strand, 19078972 - 19079045
Alignment:
Q  185 aatatgaaatttatataaaaactagggggtgcagtggcacctgtgagtctctgaagagatccgcccctggttcca 259  Q
    ||||||| |||||| ||||| || |||||||||||| ||| |||| |||||||||||||||||| ||||| ||||    
T  19078972 aatatgatatttatctaaaagct-gggggtgcagtgccacttgtgggtctctgaagagatccgctcctggctcca 19079045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 179 - 226
Target Start/End: Complemental strand, 26229273 - 26229227
Alignment:
Q  179 atgcacaatatgaaatttatataaaaactagggggtgcagtggcacct 226  Q
    ||||| ||||||||||||||||| ||||| ||||||||||||||||||    
T  26229273 atgcataatatgaaatttatatataaact-gggggtgcagtggcacct 26229227  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 253
Target Start/End: Original strand, 19079229 - 19079273
Alignment:
Q  209 gggggtgcagtggcacctgtgagtctctgaagagatccgcccctg 253  Q
    ||||||||| ||||||  ||| |||||||||||||||||||||||    
T  19079229 gggggtgcaatggcactcgtgggtctctgaagagatccgcccctg 19079273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 179 - 254
Target Start/End: Complemental strand, 44970145 - 44970070
Alignment:
Q  179 atgcacaatatgaaatttatataaaaactagggggtgcagtggcacctgtgagtctctgaagagatccgcccctgg 254  Q
    ||||| ||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||||    
T  44970145 atgcataatatgaaatttatatataaactggggggtgcagtggcacctgggagtctctgaagagatccgcccctgg 44970070  T

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Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 185 - 260
Target Start/End: Original strand, 15234915 - 15234990
Alignment:
Q  185 aatatgaaatttatataaaaactagggggtgcagtggcacctgtgagtctctgaagagatccgcccctggttccaa 260  Q
    ||||||||||||||||||||||| |||||||||| |||||||| | |||||  |||||||||||||||| ||||||    
T  15234915 aatatgaaatttatataaaaacttgggggtgcagaggcacctgggggtctccaaagagatccgcccctgattccaa 15234990  T

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Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 185 - 254
Target Start/End: Original strand, 1076072 - 1076141
Alignment:
Q  185 aatatgaaatttatataaaaactagggggtgcagtggcacctgtgagtctctgaagagatccgcccctgg 254  Q
    ||||||||||||||||||||||| ||||||||||||||| ||| | |||||  |||||||||||||||||    
T  1076072 aatatgaaatttatataaaaactggggggtgcagtggcatctgggggtctccaaagagatccgcccctgg 1076141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 209 - 253
Target Start/End: Original strand, 11907776 - 11907820
Alignment:
Q  209 gggggtgcagtggcacctgtgagtctctgaagagatccgcccctg 253  Q
    ||||||||||||||||||| |||||||||||||||||||||||||    
T  11907776 gggggtgcagtggcacctgggagtctctgaagagatccgcccctg 11907820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 185 - 253
Target Start/End: Complemental strand, 44945071 - 44945004
Alignment:
Q  185 aatatgaaatttatataaaaactagggggtgcagtggcacctgtgagtctctgaagagatccgcccctg 253  Q
    ||||||||||||||||||||||| ||||||| ||||||||||| | |||||  ||||||||||||||||    
T  44945071 aatatgaaatttatataaaaact-gggggtggagtggcacctgggggtctccaaagagatccgcccctg 44945004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 185 - 250
Target Start/End: Complemental strand, 17756638 - 17756574
Alignment:
Q  185 aatatgaaatttatataaaaactagggggtgcagtggcacctgtgagtctctgaagagatccgccc 250  Q
    ||||||||||||||||||||| | || |||||||||||||||  |||||||  |||||||||||||    
T  17756638 aatatgaaatttatataaaaatt-ggaggtgcagtggcaccttggagtctccaaagagatccgccc 17756574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 253
Target Start/End: Original strand, 21809301 - 21809368
Alignment:
Q  185 aatatgaaatttatataaaaactagggggtgcagtggcacctgtgagtctctgaagagatccgcccctg 253  Q
    ||||||| |||||||| |||||| ||||||||||||||||||| |  ||||  ||||||||||||||||    
T  21809301 aatatgatatttatatcaaaact-gggggtgcagtggcacctgaggatctccaaagagatccgcccctg 21809368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 253
Target Start/End: Original strand, 49017059 - 49017103
Alignment:
Q  209 gggggtgcagtggcacctgtgagtctctgaagagatccgcccctg 253  Q
    ||||||||||||||||||| | |||||| ||||||||||||||||    
T  49017059 gggggtgcagtggcacctgggggtctctaaagagatccgcccctg 49017103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 160
Target Start/End: Original strand, 1075938 - 1076047
Alignment:
Q  51 ttttgaataaaataagaaaaattcgcttagaattataaaaaa-cagggtgctaaggatcgaacacgcgaccttttatacactgaagggactgcttaaccg 149  Q
    |||||||||||| |||||||||||||| | ||||||||||||  ||| ||||| ||||| ||||| | || ||||| ||| |||| |||| || |||||     
T  1075938 ttttgaataaaaaaagaaaaattcgctaaaaattataaaaaaggaggatgctagggatcaaacacacaactttttacacattgaa-ggaccgcataacca 1076036  T
Q  150 ctgcaacaaca 160  Q
    ||| |||||||    
T  1076037 ctggaacaaca 1076047  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 254
Target Start/End: Complemental strand, 4038423 - 4038362
Alignment:
Q  193 atttatataaaaactagggggtgcagtggcacctgtgagtctctgaagagatccgcccctgg 254  Q
    ||||||||||||  | | |||||||||||||| |||| ||||||  ||||||||||||||||    
T  4038423 atttatataaaatttggtgggtgcagtggcacatgtgggtctctacagagatccgcccctgg 4038362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 254
Target Start/End: Complemental strand, 27400292 - 27400247
Alignment:
Q  209 gggggtgcagtggcacctgtgagtctctgaagagatccgcccctgg 254  Q
    |||||||||||| |||||| | ||||||||||||||||| ||||||    
T  27400292 gggggtgcagtgacacctgggggtctctgaagagatccgtccctgg 27400247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 253
Target Start/End: Complemental strand, 36723963 - 36723894
Alignment:
Q  185 aatatgaaatttatataaaaact-agggggtgcagtggcacctgtgagtctctgaagagatccgcccctg 253  Q
    |||||||||||||||||||||||  ||||| | ||||||| ||| | |||||  ||||||||||||||||    
T  36723963 aatatgaaatttatataaaaactgggggggggaagtggcatctgggggtctccaaagagatccgcccctg 36723894  T

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Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 92
Target Start/End: Original strand, 43080041 - 43080082
Alignment:
Q  51 ttttgaataaaataagaaaaattcgcttagaattataaaaaa 92  Q
    |||||||||||||| |||||||||||| |||||||| |||||    
T  43080041 ttttgaataaaatatgaaaaattcgctaagaattattaaaaa 43080082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 91
Target Start/End: Complemental strand, 17756774 - 17756734
Alignment:
Q  51 ttttgaataaaataagaaaaattcgcttagaattataaaaa 91  Q
    |||||||||||  |||||||||||||| |||||||||||||    
T  17756774 ttttgaataaataaagaaaaattcgctaagaattataaaaa 17756734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 245
Target Start/End: Complemental strand, 26942322 - 26942262
Alignment:
Q  185 aatatgaaatttatataaaaactagggggtgcagtggcacctgtgagtctctgaagagatc 245  Q
    ||||||||||||||||  ||||| || |||||||||||||||| | |||||  ||||||||    
T  26942322 aatatgaaatttatatgcaaactgggaggtgcagtggcacctgggggtctccaaagagatc 26942262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 91
Target Start/End: Complemental strand, 36724097 - 36724057
Alignment:
Q  51 ttttgaataaaataagaaaaattcgcttagaattataaaaa 91  Q
    |||||||||||| |||||||||||||| | |||||||||||    
T  36724097 ttttgaataaaaaaagaaaaattcgctaaaaattataaaaa 36724057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 185 - 260
Target Start/End: Complemental strand, 17549218 - 17549143
Alignment:
Q  185 aatatgaaatttatataaaaactagggggtgcagtggcacctgtgagtctctgaagagatccgcccctggttccaa 260  Q
    ||||||||||||||||||||||| |||||||||| |||||||| | |||||  |||||||||||||||| ||||||    
T  17549218 aatatgaaatttatataaaaacttgggggtgcagaggcacctgggggtctccaaagagatccgcccctgattccaa 17549143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 185 - 253
Target Start/End: Original strand, 4428887 - 4428955
Alignment:
Q  185 aatatgaaatttatataaaaactagggggtgcagtggcacctgtgagtctctgaagagatccgcccctg 253  Q
    |||||||||||||||||||| || ||||||||||||||||||  | |||||  ||||||||||||||||    
T  4428887 aatatgaaatttatataaaatctggggggtgcagtggcacctaggggtctccaaagagatccgcccctg 4428955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 185 - 253
Target Start/End: Original strand, 31736902 - 31736969
Alignment:
Q  185 aatatgaaatttatataaaaactagggggtgcagtggcacctgtgagtctctgaagagatccgcccctg 253  Q
    ||||||||||||||||||||||| ||||||||||||||||||| | |||||  ||||||| ||||||||    
T  31736902 aatatgaaatttatataaaaact-gggggtgcagtggcacctgggggtctccaaagagattcgcccctg 31736969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 185 - 227
Target Start/End: Original strand, 37101825 - 37101867
Alignment:
Q  185 aatatgaaatttatataaaaactagggggtgcagtggcacctg 227  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  37101825 aatatgaaatttatataaaaattagggggtgcagtggcacctg 37101867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 193 - 253
Target Start/End: Original strand, 37022978 - 37023038
Alignment:
Q  193 atttatataaaaactagggggtgcagtggcacctgtgagtctctgaagagatccgcccctg 253  Q
    |||||||||||   | ||||||||||||||||||| | |||||||||||||||||||||||    
T  37022978 atttatataaatgttggggggtgcagtggcacctgggggtctctgaagagatccgcccctg 37023038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 185 - 252
Target Start/End: Original strand, 14028303 - 14028370
Alignment:
Q  185 aatatgaaatttatataaaaactagggggtgcagtggcacctgtgagtctctgaagagatccgcccct 252  Q
    ||||||| |||||||| |||||| ||||||||||| ||||||| | |||||  |||||||||||||||    
T  14028303 aatatgatatttatattaaaactggggggtgcagttgcacctgggggtctccaaagagatccgcccct 14028370  T

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Target: scaffold0001 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 185 - 254
Target Start/End: Complemental strand, 181549 - 181480
Alignment:
Q  185 aatatgaaatttatataaaaactagggggtgcagtggcacctgtgagtctctgaagagatccgcccctgg 254  Q
    |||||||||||||||| |||||||||||||||||||||| ||| | |||||  |||||||||||||||||    
T  181549 aatatgaaatttatattaaaactagggggtgcagtggcatctgggggtctccaaagagatccgcccctgg 181480  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 185 - 251
Target Start/End: Original strand, 8823596 - 8823662
Alignment:
Q  185 aatatgaaatttatataaaaactagggggtgcagtggcacctgtgagtctctgaagagatccgcccc 251  Q
    ||||||| |||||||| |||||| ||||||||||||||||||| | |||||| ||||||||||||||    
T  8823596 aatatgatatttatatcaaaactggggggtgcagtggcacctgagggtctctaaagagatccgcccc 8823662  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 179 - 255
Target Start/End: Complemental strand, 16204814 - 16204738
Alignment:
Q  179 atgcacaatatgaaatttatataaaaactagggggtgcagtggcacctgtgagtctctgaagagatccgcccctggt 255  Q
    ||||| ||||||| |||||||||||   | ||||||||||||||||||| | |||||| ||||||||||||||||||    
T  16204814 atgcataatatgatatttatataaacgttggggggtgcagtggcacctgggggtctctaaagagatccgcccctggt 16204738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 185 - 250
Target Start/End: Complemental strand, 45071071 - 45071008
Alignment:
Q  185 aatatgaaatttatataaaaactagggggtgcagtggcacctgtgagtctctgaagagatccgccc 250  Q
    ||||||||||||||||||||||  ||||||||||||||||||| | |||||  |||||||||||||    
T  45071071 aatatgaaatttatataaaaac-ggggggtgcagtggcacctg-gggtctccaaagagatccgccc 45071008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 256
Target Start/End: Original strand, 42841999 - 42842068
Alignment:
Q  185 aatatgaaatttatataaaaactagggggtgcagtggcacctgtgagtctctgaagagatccgcccctggtt 256  Q
    ||||||| |||||||||||| ||  ||||||||||||||| || | |||||| |||||||||| ||||||||    
T  42841999 aatatgatatttatataaaagct--ggggtgcagtggcacttgcgggtctctaaagagatccgtccctggtt 42842068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 254
Target Start/End: Original strand, 35187645 - 35187690
Alignment:
Q  209 gggggtgcagtggcacctgtgagtctctgaagagatccgcccctgg 254  Q
    ||||||||||||||| ||| | |||||| |||||||||||||||||    
T  35187645 gggggtgcagtggcatctgggggtctctaaagagatccgcccctgg 35187690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 253
Target Start/End: Original strand, 27993727 - 27993795
Alignment:
Q  185 aatatgaaatttatataaaaactagggggtgcagtggcacctgtgagtctctgaagagatccgcccctg 253  Q
    ||||||| ||||||||||||  | |||||||||||| ||| |  | |||||| ||||||||||||||||    
T  27993727 aatatgatatttatataaaagttggggggtgcagtgacactttggggtctctaaagagatccgcccctg 27993795  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 185 - 254
Target Start/End: Original strand, 43822902 - 43822971
Alignment:
Q  185 aatatgaaatttatataaaaactagggggtgcagtggcacctgtgagtctctgaagagatccgcccctgg 254  Q
    ||||||| || |||||||||  | ||||||||||||||||||| | ||||||||||||||||||||||||    
T  43822902 aatatgatatatatataaaatttggggggtgcagtggcacctgggggtctctgaagagatccgcccctgg 43822971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 185 - 248
Target Start/End: Original strand, 13284270 - 13284333
Alignment:
Q  185 aatatgaaatttatataaaaactagggggtgcagtggcacctgtgagtctctgaagagatccgc 248  Q
    ||||||| |||||||| |||||| | ||||||||||||||||| | |||||  |||||||||||    
T  13284270 aatatgatatttatatcaaaactggtgggtgcagtggcacctgggggtctccaaagagatccgc 13284333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 92
Target Start/End: Original strand, 32164793 - 32164834
Alignment:
Q  51 ttttgaataaaataagaaaaattcgcttagaattataaaaaa 92  Q
    |||||||||||||| |||||||||||| |||||||| |||||    
T  32164793 ttttgaataaaatatgaaaaattcgctaagaattattaaaaa 32164834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 253
Target Start/End: Complemental strand, 7497097 - 7497030
Alignment:
Q  185 aatatgaaatttatataaaaactagggggtgcagtggcacctgtgagtctctgaagagatccgcccctg 253  Q
    ||||||| |||||||||||   | |||||| |||||||||||| | |||||| ||||||||||||||||    
T  7497097 aatatgatatttatataaatgttggggggtccagtggcacctggg-gtctctaaagagatccgcccctg 7497030  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 91
Target Start/End: Complemental strand, 13764782 - 13764742
Alignment:
Q  51 ttttgaataaaataagaaaaattcgcttagaattataaaaa 91  Q
    |||||||||||| |||||||||||||| | |||||||||||    
T  13764782 ttttgaataaaaaaagaaaaattcgctaaaaattataaaaa 13764742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 185 - 252
Target Start/End: Original strand, 42641928 - 42641995
Alignment:
Q  185 aatatgaaatttatataaaaactagggggtgcagtggcacctgtgagtctctgaagagatccgcccct 252  Q
    ||||| |||||||||||||| || ||||||||||||||||||| | |||||  |||||||||||||||    
T  42641928 aatataaaatttatataaaacctcgggggtgcagtggcacctgggggtctccaaagagatccgcccct 42641995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 185 - 253
Target Start/End: Complemental strand, 8541165 - 8541097
Alignment:
Q  185 aatatgaaatttatataaaaactagggggtgcagtggcacctgtgagtctctgaagagatccgcccctg 253  Q
    ||||||| |||||||||||   | ||||||||||||||||||| | |||||| ||||||||||||||||    
T  8541165 aatatgatatttatataaatgttggggggtgcagtggcacctgggggtctctaaagagatccgcccctg 8541097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 185 - 253
Target Start/End: Original strand, 47278341 - 47278408
Alignment:
Q  185 aatatgaaatttatataaaaactagggggtgcagtggcacctgtgagtctctgaagagatccgcccctg 253  Q
    ||||||| ||||||||||| | | ||||||||||||||||||| | |||||| ||||||||||||||||    
T  47278341 aatatgatatttatataaatatt-gggggtgcagtggcacctgggggtctctaaagagatccgcccctg 47278408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 51 - 129
Target Start/End: Complemental strand, 43410317 - 43410238
Alignment:
Q  51 ttttgaataaaataagaaaaattcgcttagaattataaaaaacagggtgcta-aggatcgaacacgcgaccttttataca 129  Q
    |||| |||||||||||||||||||||| |||||||||||||  |||||| ||  ||||| ||| |||||||||| |||||    
T  43410317 tttttaataaaataagaaaaattcgctaagaattataaaaaggagggtgttaggggatcaaacgcgcgacctttaataca 43410238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 255
Target Start/End: Complemental strand, 25644645 - 25644575
Alignment:
Q  185 aatatgaaatttatataaaaactagggggtgcagtggcacctgtgagtctctgaagagatccgcccctggt 255  Q
    |||||||||||||||| |||||| ||||||||| ||||| ||| | |||||  |||||||| |||||||||    
T  25644645 aatatgaaatttatattaaaactggggggtgcaatggcatctgagggtctccaaagagatctgcccctggt 25644575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 47099889 - 47099852
Alignment:
Q  185 aatatgaaatttatataaaaactagggggtgcagtggc 222  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  47099889 aatatgaaatttatataaaaactggggggtgcagtggc 47099852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 253
Target Start/End: Complemental strand, 27813556 - 27813512
Alignment:
Q  209 gggggtgcagtggcacctgtgagtctctgaagagatccgcccctg 253  Q
    ||||||||||||||||||| | |||||| ||||||||||||||||    
T  27813556 gggggtgcagtggcacctgggggtctctaaagagatccgcccctg 27813512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 92
Target Start/End: Complemental strand, 47100025 - 47099984
Alignment:
Q  51 ttttgaataaaataagaaaaattcgcttagaattataaaaaa 92  Q
    |||||||||||| |||||||||||||| | ||||||||||||    
T  47100025 ttttgaataaaaaaagaaaaattcgctaaaaattataaaaaa 47099984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 179 - 253
Target Start/End: Complemental strand, 1787393 - 1787322
Alignment:
Q  179 atgcacaatatgaaatttatataaaaactagggggtgcagtggcacctgtgagtctctgaagagatccgcccctg 253  Q
    ||||| ||||||||||||||||| |||||  |||||||||||  ||||| |||||||||||||||||||||||||    
T  1787393 atgcataatatgaaatttatatataaactgaggggtgcagtg--acctg-gagtctctgaagagatccgcccctg 1787322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 185 - 255
Target Start/End: Complemental strand, 4198269 - 4198200
Alignment:
Q  185 aatatgaaatttatataaaaactagggggtgcagtggcacctgtgagtctctgaagagatccgcccctggt 255  Q
    |||||||||||||||||||| || ||||||||||||||||||| | |||||  ||||||||||||| ||||    
T  4198269 aatatgaaatttatataaaacctggggggtgcagtggcacctg-gggtctccaaagagatccgcccttggt 4198200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 254
Target Start/End: Original strand, 36565779 - 36565848
Alignment:
Q  185 aatatgaaatttatataaaaactagggggtgcagtggcacctgtgagtctctgaagagatccgcccctgg 254  Q
    |||||||||||||||||||| || ||||||||||||||||||| |  |||   |||||||||||||||||    
T  36565779 aatatgaaatttatataaaatctggggggtgcagtggcacctggggatcttcaaagagatccgcccctgg 36565848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 253
Target Start/End: Original strand, 46671531 - 46671588
Alignment:
Q  196 tatataaaaactagggggtgcagtggcacctgtgagtctctgaagagatccgcccctg 253  Q
    |||||||||  | ||||||||||||||||||| | |||||||||||||||||||||||    
T  46671531 tatataaaatttggggggtgcagtggcacctgggggtctctgaagagatccgcccctg 46671588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 253
Target Start/End: Original strand, 25160642 - 25160709
Alignment:
Q  185 aatatgaaatttatataaaaactagggggtgcagtggcacctgtgagtctctgaagagatccgcccctg 253  Q
    ||||||| ||||||||||||  | ||||||||||||||||||  | |||||| ||||||||||||||||    
T  25160642 aatatgatatttatataaaag-tcgggggtgcagtggcacctaggggtctctaaagagatccgcccctg 25160709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 254
Target Start/End: Original strand, 16632324 - 16632369
Alignment:
Q  209 gggggtgcagtggcacctgtgagtctctgaagagatccgcccctgg 254  Q
    ||||||||||||||||||| | |||||| |||||||| ||||||||    
T  16632324 gggggtgcagtggcacctgggggtctctaaagagatctgcccctgg 16632369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 254
Target Start/End: Original strand, 43671450 - 43671495
Alignment:
Q  209 gggggtgcagtggcacctgtgagtctctgaagagatccgcccctgg 254  Q
    ||||||||||||||||||| | |||||| ||||||||||| |||||    
T  43671450 gggggtgcagtggcacctgggggtctctaaagagatccgctcctgg 43671495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 253
Target Start/End: Complemental strand, 3712552 - 3712508
Alignment:
Q  209 gggggtgcagtggcacctgtgagtctctgaagagatccgcccctg 253  Q
    ||||||||||||||||||||| |||||  | ||||||||||||||    
T  3712552 gggggtgcagtggcacctgtgggtctccaaggagatccgcccctg 3712508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 91
Target Start/End: Complemental strand, 4198404 - 4198364
Alignment:
Q  51 ttttgaataaaataagaaaaattcgcttagaattataaaaa 91  Q
    |||||||||||| |||||||||||||| |||||||| ||||    
T  4198404 ttttgaataaaaaaagaaaaattcgctaagaattatgaaaa 4198364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 91
Target Start/End: Complemental strand, 41503012 - 41502972
Alignment:
Q  51 ttttgaataaaataagaaaaattcgcttagaattataaaaa 91  Q
    |||||| |||||||||||||||||| | |||||||||||||    
T  41503012 ttttgagtaaaataagaaaaattcgttaagaattataaaaa 41502972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0648 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0648
Description:

Target: scaffold0648; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 254
Target Start/End: Original strand, 4582 - 4651
Alignment:
Q  185 aatatgaaatttatataaaaactagggggtgcagtggcacctgtgagtctctgaagagatccgcccctgg 254  Q
    ||||||| |||||||||||   | ||||||||||||||||||| | |||||| |||||||||||||||||    
T  4582 aatatgatatttatataaatgttggggggtgcagtggcacctgggggtctctaaagagatccgcccctgg 4651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0274 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0274
Description:

Target: scaffold0274; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 254
Target Start/End: Original strand, 4052 - 4121
Alignment:
Q  185 aatatgaaatttatataaaaactagggggtgcagtggcacctgtgagtctctgaagagatccgcccctgg 254  Q
    ||||||| |||||||||||   | ||||||||||||||||||| | |||||| |||||||||||||||||    
T  4052 aatatgatatttatataaatgttggggggtgcagtggcacctgggggtctctaaagagatccgcccctgg 4121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 202 - 249
Target Start/End: Original strand, 19779875 - 19779921
Alignment:
Q  202 aaaactagggggtgcagtggcacctgtgagtctctgaagagatccgcc 249  Q
    |||||| ||||||||||||||||||| | |||||||||||||||||||    
T  19779875 aaaactggggggtgcagtggcacctg-gggtctctgaagagatccgcc 19779921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 255
Target Start/End: Complemental strand, 37045028 - 37044966
Alignment:
Q  193 atttatataaaaactagggggtgcagtggcacctgtgagtctctgaagagatccgcccctggt 255  Q
    |||||||||||   | ||||||||||||||||||| | |||| ||||||||| ||||||||||    
T  37045028 atttatataaatgttggggggtgcagtggcacctgggggtctatgaagagattcgcccctggt 37044966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 253
Target Start/End: Complemental strand, 7011382 - 7011315
Alignment:
Q  185 aatatgaaatttatataaaaactagggggtgcagtggcacctgtgagtctctgaagagatccgcccctg 253  Q
    |||||||||||||||||||||||| ||| || ||||||| ||  | |||||  ||||||||||||||||    
T  7011382 aatatgaaatttatataaaaacta-gggatgtagtggcaacttggggtctccaaagagatccgcccctg 7011315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 253
Target Start/End: Complemental strand, 230335 - 230291
Alignment:
Q  209 gggggtgcagtggcacctgtgagtctctgaagagatccgcccctg 253  Q
    |||||||||||| |||||| | |||||| ||||||||||||||||    
T  230335 gggggtgcagtgacacctgggggtctctaaagagatccgcccctg 230291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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