View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18616_low_10 (Length: 356)
Name: NF18616_low_10
Description: NF18616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18616_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 9 - 338
Target Start/End: Complemental strand, 55101933 - 55101601
Alignment:
| Q |
9 |
aataataataataatcctattcagacaatttcaagttcttgaagaatttatcctagcctgaagtaagaattgaatcgattttagaataaattcatacaaa |
108 |
Q |
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| T |
55101933 |
aataataataataatcctattcagacaatttcaagttcttgaagaatttattctagcctgaagtaagaattgaatcaattttagaataaattcatacaaa |
55101834 |
T |
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| Q |
109 |
gacgtgtgagattttacttggtactgaccagatatccattttccatacgttggtaaatgtcaaatgttacagaaatgttcccatttggatccaaagggtc |
208 |
Q |
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| T |
55101833 |
gacgtgtgagattttacttggtactgaccagatatccattttccatacgttggtaaatgtcaaatgttacagaaatgttcccatttggatccaaagggtc |
55101734 |
T |
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| Q |
209 |
atagcaatctgcatacaagtgtgaaatgagc---nnnnnnntattaaaagtcaaattagcaagaacagaatagaatagaagtggcagaagaaggagaagt |
305 |
Q |
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| T |
55101733 |
atagcaatctgcatacaagtgtgaaatgagcaaaaaaaaaaaattaaaagtcaaattagcaagaacagaatagaatagaagtggcagaagaaggagaagt |
55101634 |
T |
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| Q |
306 |
gcatgcagcacctgataaagtgcagagagtagt |
338 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
55101633 |
gcatgcagcacctgataaagtgcagagagtagt |
55101601 |
T |
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