View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18616_low_12 (Length: 337)

Name: NF18616_low_12
Description: NF18616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18616_low_12
NF18616_low_12
[»] chr4 (26 HSPs)
chr4 (18-315)||(27506801-27507098)
chr4 (18-315)||(27485681-27485980)
chr4 (18-97)||(27563304-27563383)
chr4 (18-92)||(27415724-27415798)
chr4 (18-108)||(27420511-27420601)
chr4 (18-111)||(27412767-27412860)
chr4 (18-94)||(27504025-27504101)
chr4 (18-104)||(27497273-27497359)
chr4 (18-122)||(27468260-27468364)
chr4 (18-94)||(27475540-27475616)
chr4 (18-124)||(27478814-27478920)
chr4 (18-92)||(27570012-27570086)
chr4 (18-111)||(27425915-27426008)
chr4 (18-124)||(27524627-27524733)
chr4 (18-122)||(27514994-27515098)
chr4 (23-94)||(27423330-27423401)
chr4 (18-96)||(27585791-27585869)
chr4 (18-94)||(27565912-27565988)
chr4 (18-94)||(27490063-27490139)
chr4 (18-94)||(27508955-27509031)
chr4 (17-55)||(27460580-27460618)
chr4 (17-55)||(27480003-27480041)
chr4 (18-64)||(27559231-27559277)
chr4 (17-90)||(27437236-27437309)
chr4 (17-54)||(27473994-27474031)
chr4 (23-63)||(27540115-27540155)
[»] chr5 (2 HSPs)
chr5 (18-126)||(1756686-1756794)
chr5 (18-104)||(1754791-1754877)
[»] chr3 (4 HSPs)
chr3 (18-106)||(50910063-50910151)
chr3 (18-65)||(48840702-48840749)
chr3 (22-112)||(55084893-55084983)
chr3 (18-55)||(50904792-50904829)


Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 18 - 315
Target Start/End: Original strand, 27506801 - 27507098
Alignment:
Q  18 atatgatcatcccatgggtggactcaccattccttgcactgaagatgtctttcaacacataacttctcgcttgaatgagccataaatctgacactttagc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  27506801 atatgatcatcccatgggtggactcaccattccttgcactgaagatgtctttcaacacataacttcttgcttgaatgagccataaatctgacactttagc 27506900  T
Q  118 atactgacagattatagagaaattttgtaccataggaattttttagcttgtaaaaattatacctttttattggaaacattgaaaaatacttatctgaatt 217  Q
    ||||||||||||||||||||||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  27506901 atactgacagattatagagaaattttgtaccatacaaattttttaacttgtaaaaattatacctttttattggaaacatcgaaaaatacttatctgaatt 27507000  T
Q  218 aaaagaaaaacaactttcatatttccttcttgtgtaatgacaataagatcggttactttatcaattacaatttcagcactccgcaatttgaacatcac 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  27507001 aaaagaaaaacaactttcatatttccttcttgtgtaatgacaataagatcagttactttatcaattacaatttcagcactccgcaatttgaacatcac 27507098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 18 - 315
Target Start/End: Complemental strand, 27485980 - 27485681
Alignment:
Q  18 atatgatcatcccatgggtggactcaccattccttgcactgaagatgtctttcaacacataacttctcgcttgaat-gagccataaatctgacactttag 116  Q
    ||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||| |||||||| |||| ||| ||||||| |||||||||||||||    
T  27485980 atatgatcatcccatgggtggcctcaccattccttgcactgaaggcgtctttcaacacgtaacttcttgcttaaattgagccatgaatctgacactttag 27485881  T
Q  117 catactgacagatta-tagagaaattttgtaccataggaattttttagcttgtaaaaattatacctttttattggaaacattgaaaaatacttatctgaa 215  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||  |||||||| |||||||||    
T  27485880 catactgacagattagtagagaaattttgtaccataggaattttttaacttgtaaaaattataccttctcattggaaacagagaaaaatagttatctgaa 27485781  T
Q  216 ttaaaagaaaaacaactttcatatttccttcttgtgtaatgacaataagatcggttactttatcaattacaatttcagcactccgcaatttgaacatcac 315  Q
    | ||||||||||||||||||||||||| |||||||||| ||||  ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||    
T  27485780 tcaaaagaaaaacaactttcatatttcgttcttgtgtagtgacggtaagatcagttactttatcaattacaatttcagcaatccgcaatttgaacatcac 27485681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 27563383 - 27563304
Alignment:
Q  18 atatgatcatcccatgggtggactcaccattccttgcactgaagatgtctttcaacacataacttctcgcttgaatgagc 97  Q
    |||||||||||| |||||||| ||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  27563383 atatgatcatccaatgggtggcctcacaattccttgcactgaagatgcctttcaacatataacttctcgcttgaatgagc 27563304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 18 - 92
Target Start/End: Original strand, 27415724 - 27415798
Alignment:
Q  18 atatgatcatcccatgggtggactcaccattccttgcactgaagatgtctttcaacacataacttctcgcttgaa 92  Q
    |||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  27415724 atatgatcattccatgggtggcctcaccattccttgcacagaagatgtctttcaacacataacatctcgcttgaa 27415798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 18 - 108
Target Start/End: Original strand, 27420511 - 27420601
Alignment:
Q  18 atatgatcatcccatgggtggactcaccattccttgcactgaagatgtctttcaacacataacttctcgcttgaatgagccataaatctga 108  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||| |||| |||| || || |||||||    
T  27420511 atatgatcatcccatgggtggcctcaccattccttgcacggaagatgtctttcaacatataacttcttgcttcaatgggctatgaatctga 27420601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 27412767 - 27412860
Alignment:
Q  18 atatgatcatcccatgggtggactcaccattccttgcactgaagatgtctttcaacacataacttctcgcttgaatgagccataaatctgacac 111  Q
    |||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||| ||||| ||||||| ||||| || || ||||||||||    
T  27412767 atatgatcatccaatgggtggcctcaccattccttgcacggaagatgtctttcaacatataacatctcgctcgaatgggctatgaatctgacac 27412860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 27504025 - 27504101
Alignment:
Q  18 atatgatcatcccatgggtggactcaccattccttgcactgaagatgtctttcaacacataacttctcgcttgaatg 94  Q
    |||||||||||| |||||||| ||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||    
T  27504025 atatgatcatccaatgggtggcctcaccattccttgcaccgaagatgtcttccaacacataacttcttgcttgaatg 27504101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 27497359 - 27497273
Alignment:
Q  18 atatgatcatcccatgggtggactcaccattccttgcactgaagatgtctttcaacacataacttctcgcttgaatgagccataaat 104  Q
    ||||||||||||||  ||||| ||||||||||||||||||||| ||||||| |||| |||||||||||||||||||| || ||||||    
T  27497359 atatgatcatcccacaggtggcctcaccattccttgcactgaaaatgtcttccaacgcataacttctcgcttgaatgggctataaat 27497273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 122
Target Start/End: Complemental strand, 27468364 - 27468260
Alignment:
Q  18 atatgatcatcccatgggtggactcaccattccttgcactgaagatgtctttcaacacataacttctcgcttgaatgagccataaatctgacactttagc 117  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||| |||| ||||  ||||||||  | || ||||| ||||| ||||    
T  27468364 atatgatcatcccatgggtggcctcaccattccttgcacggaagatgtcttccaacatataatttcttccttgaatggactatgaatcttacactgtagc 27468265  T
Q  118 atact 122  Q
    |||||    
T  27468264 atact 27468260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 27475616 - 27475540
Alignment:
Q  18 atatgatcatcccatgggtggactcaccattccttgcactgaagatgtctttcaacacataacttctcgcttgaatg 94  Q
    ||||||||||||||||||||| ||||||||||||||| | ||||||||||| ||||| ||||||||| |||||||||    
T  27475616 atatgatcatcccatgggtggcctcaccattccttgctccgaagatgtcttccaacatataacttcttgcttgaatg 27475540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 27478920 - 27478814
Alignment:
Q  18 atatgatcatcccatgggtggactcaccattccttgcactgaagatgtctttcaacacataacttctcgcttgaatgagccataaatctgacactttagc 117  Q
    ||||||||||||||||||||| ||||||||||||||| | |||||||| || ||||| ||||||||| ||||||||| || || | ||| ||||| || |    
T  27478920 atatgatcatcccatgggtggcctcaccattccttgctccgaagatgtgttccaacatataacttcttgcttgaatgggctatgattcttacactgtaac 27478821  T
Q  118 atactga 124  Q
    |||||||    
T  27478820 atactga 27478814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 27570086 - 27570012
Alignment:
Q  18 atatgatcatcccatgggtggactcaccattccttgcactgaagatgtctttcaacacataacttctcgcttgaa 92  Q
    ||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||| ||||| |||||| ||||    
T  27570086 atatgatcatcccatgggtggcctcaccattccttgcaccgaagatatctttcaacatataacatctcgcatgaa 27570012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 27425915 - 27426008
Alignment:
Q  18 atatgatcatcccatgggtggactcaccattccttgcactgaagatgtctttcaacacataacttctcgcttgaatgagccataaatctgacac 111  Q
    ||||||||||||||||||||| ||||||||||||||||| || ||||| |||||||| || || |||||||||||||  | || ||||||||||    
T  27425915 atatgatcatcccatgggtggcctcaccattccttgcaccgaggatgtatttcaacatatgacatctcgcttgaatggcctatgaatctgacac 27426008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 18 - 124
Target Start/End: Original strand, 27524627 - 27524733
Alignment:
Q  18 atatgatcatcccatgggtggactcaccattccttgcactgaagatgtctttcaacacataacttctcgcttgaatgagccataaatctgacactttagc 117  Q
    |||||||||||| |||||||| ||||||||||| ||||| ||||||||||| ||||| ||||||||  |||||||||  || | || || |||||||| |    
T  27524627 atatgatcatccaatgggtggcctcaccattccgtgcaccgaagatgtcttccaacatataacttcatgcttgaatggcccttgaaccttacactttaac 27524726  T
Q  118 atactga 124  Q
    |||||||    
T  27524727 atactga 27524733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 122
Target Start/End: Original strand, 27514994 - 27515098
Alignment:
Q  18 atatgatcatcccatgggtggactcaccattccttgcactgaagatgtctttcaacacataacttctcgcttgaatgagccataaatctgacactttagc 117  Q
    ||||||||||||||||||||| |||||||||||||| || ||||||||||| || || |||| ||||  ||||||||  | || ||||| ||||| ||||    
T  27514994 atatgatcatcccatgggtggcctcaccattccttgtacagaagatgtcttccagcatataatttcttccttgaatggactatgaatcttacactgtagc 27515093  T
Q  118 atact 122  Q
    |||||    
T  27515094 atact 27515098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 23 - 94
Target Start/End: Original strand, 27423330 - 27423401
Alignment:
Q  23 atcatcccatgggtggactcaccattccttgcactgaagatgtctttcaacacataacttctcgcttgaatg 94  Q
    |||||||||||||||| |||||| |||||||||| |||||||| || ||||| |||||||||| ||||||||    
T  27423330 atcatcccatgggtggcctcaccgttccttgcacggaagatgttttccaacatataacttctcacttgaatg 27423401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 27585791 - 27585869
Alignment:
Q  18 atatgatcatcccatgggtggactcaccattccttgcactgaagatgtctttcaacacataacttctcgcttgaatgag 96  Q
    |||||||||||| ||||| || ||||||||||||||||| ||||||| |||  |||| ||||||| |||||||||||||    
T  27585791 atatgatcatccaatgggaggtctcaccattccttgcacagaagatgccttcaaacatataacttatcgcttgaatgag 27585869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 27565988 - 27565912
Alignment:
Q  18 atatgatcatcccatgggtggactcaccattccttgcactgaagatgtctttcaacacataacttctcgcttgaatg 94  Q
    |||||||||||| |||||||| ||||||||||||||    ||||||||||| ||||| ||||||||| |||||||||    
T  27565988 atatgatcatccaatgggtggcctcaccattccttgtggcgaagatgtcttccaacatataacttcttgcttgaatg 27565912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 27490063 - 27490139
Alignment:
Q  18 atatgatcatcccatgggtggactcaccattccttgcactgaagatgtctttcaacacataacttctcgcttgaatg 94  Q
    |||||||||||| |||||||| ||||||||||||  ||  ||||||| ||| ||| |||||| ||||||||| ||||    
T  27490063 atatgatcatccaatgggtggcctcaccattcctgtcaacgaagatgacttccaatacataatttctcgctttaatg 27490139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 27508955 - 27509031
Alignment:
Q  18 atatgatcatcccatgggtggactcaccattccttgcactgaagatgtctttcaacacataacttctcgcttgaatg 94  Q
    |||||||||||| | |||||| ||||||||||| ||| | |||||||| || ||||| ||||||||| |||| ||||    
T  27508955 atatgatcatccaacgggtggcctcaccattccatgctccgaagatgtgttccaacatataacttcttgcttcaatg 27509031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 27460580 - 27460618
Alignment:
Q  17 aatatgatcatcccatgggtggactcaccattccttgca 55  Q
    ||||||||||||| |||||||| ||||||||||||||||    
T  27460580 aatatgatcatccaatgggtggtctcaccattccttgca 27460618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 27480003 - 27480041
Alignment:
Q  17 aatatgatcatcccatgggtggactcaccattccttgca 55  Q
    ||||||||||||| |||||||| ||||||||||||||||    
T  27480003 aatatgatcatccaatgggtggtctcaccattccttgca 27480041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 27559277 - 27559231
Alignment:
Q  18 atatgatcatcccatgggtggactcaccattccttgcactgaagatg 64  Q
    |||||||||||| |||||||| ||||| |||||||||| ||||||||    
T  27559277 atatgatcatccaatgggtggtctcacaattccttgcagtgaagatg 27559231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 90
Target Start/End: Original strand, 27437236 - 27437309
Alignment:
Q  17 aatatgatcatcccatgggtggactcaccattccttgcactgaagatgtctttcaacacataacttctcgcttg 90  Q
    ||||||||||||| |||| ||| ||  | ||||||||||| ||||||||||| || |||||||  |||||||||    
T  27437236 aatatgatcatccaatggttggccttcctattccttgcaccgaagatgtcttccagcacataatgtctcgcttg 27437309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 27473994 - 27474031
Alignment:
Q  17 aatatgatcatcccatgggtggactcaccattccttgc 54  Q
    ||||||||||||| |||||||| |||||||||||||||    
T  27473994 aatatgatcatccaatgggtggtctcaccattccttgc 27474031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 63
Target Start/End: Original strand, 27540115 - 27540155
Alignment:
Q  23 atcatcccatgggtggactcaccattccttgcactgaagat 63  Q
    ||||||| ||||||||||| ||||||||||||| |||||||    
T  27540115 atcatccaatgggtggactaaccattccttgcagtgaagat 27540155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 126
Target Start/End: Complemental strand, 1756794 - 1756686
Alignment:
Q  18 atatgatcatcccatgggtggactcaccattccttgcactgaagatgtctttcaacacataacttctcgcttgaatgagccataaatctgacactttagc 117  Q
    ||||||||| ||||||||||| ||||||||||||||||| ||||||| ||| ||||| || || ||| ||||||||| || || |||||   ||| ||||    
T  1756794 atatgatcaccccatgggtggcctcaccattccttgcaccgaagatgccttccaacatattacctcttgcttgaatgggctatgaatcttttactgtagc 1756695  T
Q  118 atactgaca 126  Q
    |||||||||    
T  1756694 atactgaca 1756686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 1754791 - 1754877
Alignment:
Q  18 atatgatcatcccatgggtggactcaccattccttgcactgaagatgtctttcaacacataacttctcgcttgaatgagccataaat 104  Q
    |||||||||||| |||||||| |||||||||| |||||| |||||||||||  || | ||||||||| |||| |||| || ||||||    
T  1754791 atatgatcatccaatgggtggcctcaccattctttgcacagaagatgtcttcgaaaatataacttctagcttaaatgggctataaat 1754877  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 50910063 - 50910151
Alignment:
Q  18 atatgatcatcccatgggtggactcaccattccttgcactgaagatgtctttcaacacataacttctcgcttgaatgagccataaatct 106  Q
    |||||||||||| |||||||| ||||| ||||||||||| |||||||||||    || || ||||||||||| ||||||| ||||||||    
T  50910063 atatgatcatccaatgggtggcctcacaattccttgcacagaagatgtcttcttgcaaattacttctcgcttcaatgagctataaatct 50910151  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 48840749 - 48840702
Alignment:
Q  18 atatgatcatcccatgggtggactcaccattccttgcactgaagatgt 65  Q
    |||||||||||| |||||||| ||||| ||||||||||| ||||||||    
T  48840749 atatgatcatccaatgggtggcctcacaattccttgcacagaagatgt 48840702  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 112
Target Start/End: Original strand, 55084893 - 55084983
Alignment:
Q  22 gatcatcccatgggtggactcaccattccttgcactgaagatgtctttcaacacataacttctcgcttgaatgagccataaatctgacact 112  Q
    |||||||| |||||||| ||||| ||||||||||| |||||||| ||    || || ||||||||||| ||||| | |||||||| |||||    
T  55084893 gatcatccaatgggtggcctcacaattccttgcacagaagatgttttctttcatattacttctcgcttcaatgaactataaatcttacact 55084983  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 50904829 - 50904792
Alignment:
Q  18 atatgatcatcccatgggtggactcaccattccttgca 55  Q
    |||||||||||| |||||||| ||||||||||||||||    
T  50904829 atatgatcatccaatgggtggcctcaccattccttgca 50904792  T

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