View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18616_low_13 (Length: 315)
Name: NF18616_low_13
Description: NF18616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18616_low_13 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 39263940 - 39264254
Alignment:
| Q |
1 |
tataatactaagtattcatcaaccaggtttcagaatagtgaagctgttcaattcattgttgttgttagctaatggttctgtgttacatcatggaactgct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39263940 |
tataatactaagtattcatcaaccaggtttcagaatagtgaagctgttcaattcattgttgttgttagctaatggttctgtgttacatcatggaactgct |
39264039 |
T |
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| Q |
101 |
gatttactgagtgtgaatttgagattaatgagtctagagcttcctcttcatgttaatgtagttgaatttgctattgattccattgatatcattcaacaac |
200 |
Q |
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|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
39264040 |
gatttactgagtgtgaatttgagattgatgggtctagagcttcctcttcatgttaatgtagttgaatttgctattgattccattgatgtcattcaacaac |
39264139 |
T |
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| Q |
201 |
aacaacaatggcgggtggaaaccgaaacaccaaggcgattgcaagggacaacgcatcaaaagaaaggcggagatgatgaacaacaaggtgacgataaaag |
300 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
39264140 |
aacaacaatggcaggtggaaaccgaaacaccaaggcgattgcaagggacaacgcaacaaaagaaaggcagagatgatgaacaacaaggtgacgataaaag |
39264239 |
T |
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| Q |
301 |
tggtaagttctcttt |
315 |
Q |
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|||||||||| |||| |
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| T |
39264240 |
tggtaagttcacttt |
39264254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 44067673 - 44067858
Alignment:
| Q |
1 |
tataatactaagtattcatcaaccaggtttcagaatagtgaagctgttcaattcattgttgttgttagctaatggttctgtgttacatcatggaactgct |
100 |
Q |
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|||||||||||||||||||||||| || ||| | ||||||||| |||| |||||| | ||||||| | ||||| ||||||||||||||||||||| |
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| T |
44067673 |
tataatactaagtattcatcaacccgggttccggatagtgaagttgttgaattcaatactgttgttggtgaatggcagtgtgttacatcatggaactgca |
44067772 |
T |
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| Q |
101 |
gatttactgagtgtgaatttgagattaatgagtctagagcttcctcttcatgttaatgtagttgaatttgctattgattccattga |
186 |
Q |
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||||| || ||||||| |||| || ||| || ||||||||||||||||||| || | ||||| ||||||||||| |||||||| |
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| T |
44067773 |
gatttgttggatgtgaatctgaggttgatgggtttagagcttcctcttcatgtcaacattgttgagtttgctattgaatccattga |
44067858 |
T |
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