View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18616_low_14 (Length: 304)

Name: NF18616_low_14
Description: NF18616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18616_low_14
NF18616_low_14
[»] chr3 (9 HSPs)
chr3 (20-203)||(26770949-26771134)
chr3 (203-287)||(26770404-26770488)
chr3 (26-174)||(34332806-34332954)
chr3 (26-174)||(40930519-40930667)
chr3 (50-184)||(35214354-35214486)
chr3 (50-184)||(29523724-29523860)
chr3 (50-138)||(11203844-11203932)
chr3 (26-174)||(2364278-2364426)
chr3 (26-174)||(7312777-7312925)
[»] chr2 (5 HSPs)
chr2 (20-203)||(17764922-17765107)
chr2 (50-174)||(41207041-41207165)
chr2 (30-203)||(28252725-28252900)
chr2 (50-177)||(38604362-38604489)
chr2 (26-174)||(4552170-4552318)
[»] chr6 (8 HSPs)
chr6 (20-199)||(15958777-15958958)
chr6 (50-174)||(18651225-18651349)
chr6 (26-132)||(2553638-2553744)
chr6 (81-174)||(24767415-24767508)
chr6 (26-178)||(14372978-14373130)
chr6 (50-184)||(21630086-21630222)
chr6 (50-184)||(20883012-20883148)
chr6 (50-138)||(17606361-17606449)
[»] chr1 (5 HSPs)
chr1 (27-203)||(47623037-47623215)
chr1 (26-174)||(51052481-51052629)
chr1 (26-174)||(11909096-11909244)
chr1 (50-138)||(16917836-16917924)
chr1 (50-138)||(43388392-43388480)
[»] scaffold0472 (1 HSPs)
scaffold0472 (46-174)||(3273-3401)
[»] chr7 (7 HSPs)
chr7 (26-174)||(11277243-11277391)
chr7 (26-174)||(47876984-47877132)
chr7 (50-174)||(235428-235552)
chr7 (26-193)||(17720636-17720805)
chr7 (46-130)||(29967996-29968080)
chr7 (73-138)||(25619507-25619572)
chr7 (26-174)||(4938119-4938267)
[»] chr5 (13 HSPs)
chr5 (50-174)||(42928156-42928280)
chr5 (26-174)||(23238385-23238533)
chr5 (26-174)||(28535666-28535814)
chr5 (27-132)||(8228028-8228133)
chr5 (26-174)||(12825200-12825348)
chr5 (50-184)||(8300161-8300297)
chr5 (26-174)||(30732305-30732453)
chr5 (74-174)||(35983782-35983882)
chr5 (50-184)||(33385353-33385489)
chr5 (50-184)||(18359071-18359207)
chr5 (50-184)||(27767067-27767203)
chr5 (50-138)||(25857451-25857539)
chr5 (98-174)||(31641584-31641660)
[»] chr4 (12 HSPs)
chr4 (29-203)||(11587158-11587334)
chr4 (26-174)||(7403914-7404062)
chr4 (50-138)||(45472736-45472824)
chr4 (50-133)||(55725718-55725801)
chr4 (27-131)||(19755269-19755373)
chr4 (27-131)||(19784433-19784537)
chr4 (50-132)||(15740246-15740328)
chr4 (26-128)||(47685932-47686034)
chr4 (26-143)||(1828562-1828679)
chr4 (108-177)||(19735735-19735804)
chr4 (26-174)||(13270882-13271030)
chr4 (26-174)||(23642582-23642730)
[»] chr8 (10 HSPs)
chr8 (20-118)||(34137010-34137108)
chr8 (26-174)||(13396389-13396537)
chr8 (26-128)||(32266565-32266667)
chr8 (50-184)||(37434157-37434293)
chr8 (50-174)||(2170367-2170491)
chr8 (26-174)||(9922602-9922750)
chr8 (50-177)||(13200148-13200275)
chr8 (26-174)||(7924387-7924535)
chr8 (50-138)||(20824321-20824409)
chr8 (74-174)||(41665360-41665460)
[»] scaffold0034 (1 HSPs)
scaffold0034 (26-174)||(105834-105982)


Alignment Details
Target: chr3 (Bit Score: 131; Significance: 6e-68; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 20 - 203
Target Start/End: Complemental strand, 26771134 - 26770949
Alignment:
Q  20 atgataccacggtttgccgaatttactttcgtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccata 119  Q
    |||||||||||||||||| ||||| ||||||||||||||||||| |||||| ||||||||  ||| ||||||| |||||||||||| ||||||||||| |    
T  26771134 atgataccacggtttgccaaatttgctttcgtaggtaaacgatccctcaaaagccgccaagtaagaatagagactttaagaggagcctgtttatgccaca 26771035  T
Q  120 ttaactccatatttagatgtaactaaggatgttcctgtaatgttagcatgtcat--acaccacgaactgaatacccgccaccctga 203  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  26771034 ttaactccatatttggatgtaactaaggatgttcctgtaatgttagcatgtcatacacaccacgaactgaatacccgccaccctga 26770949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 203 - 287
Target Start/End: Complemental strand, 26770488 - 26770404
Alignment:
Q  203 aaaaagtgaataactttaagataacgtggttcaatgagatccacaaaatacatatgggtggaaatatgctagtgcagtgctaact 287  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26770488 aaaaagtgaataactttaagataacatggttcaatgagatccacaaaatacatatgggtggaaatatgctagtgcagtgctaact 26770404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 26 - 174
Target Start/End: Complemental strand, 34332954 - 34332806
Alignment:
Q  26 ccacggtttgccgaatttactttcgtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaact 125  Q
    |||||||||||| ||||   ||| |||||||| |||||||||| | |  ||||| |||| ||||| | ||| |||||| | ||||||||||| |||||||    
T  34332954 ccacggtttgccaaattattttttgtaggtaatcgatctctcagaagttgccaagcaaggatagatactttgagaggaacctgtttatgccaaattaact 34332855  T
Q  126 ccatatttagatgtaactaaggatgttcctgtaatgttagcatgtcata 174  Q
    |||||||  |||||||||  || || |||||| |||| |||||||||||    
T  34332854 ccatattatgatgtaactggggctgctcctgtgatgtcagcatgtcata 34332806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 26 - 174
Target Start/End: Complemental strand, 40930667 - 40930519
Alignment:
Q  26 ccacggtttgccgaatttactttcgtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaact 125  Q
    |||||||||||| ||||   ||| |||||||| | ||| |||||| | |||||| |||| ||||| | ||| |||||| | |||||||| || | |||||    
T  40930667 ccacggtttgccaaattattttttgtaggtaaccaatccctcaaaagtcgccaagcaaggatagatactttgagaggaacctgtttatgtcaaactaact 40930568  T
Q  126 ccatatttagatgtaactaaggatgttcctgtaatgttagcatgtcata 174  Q
    |||| ||| |||| |||| ||| || |||||| |||| |||||||||||    
T  40930567 ccatgttttgatgcaactgaggttgctcctgtgatgtcagcatgtcata 40930519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 50 - 184
Target Start/End: Complemental strand, 35214486 - 35214354
Alignment:
Q  50 gtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaactccatatttagatgtaactaaggat 149  Q
    ||||| |||||||| |||||   |||||||||||| ||||| | ||| | |||| | ||||||||||| ||||||||||||||| |||| |  | ||| |    
T  35214486 gtaggcaaacgatccctcaacatccgccaaacaaggatagaaacttttaaaggaacctgtttatgccagattaactccatattttgatgaacatgaggtt 35214387  T
Q  150 gttcctgtaatgttagcatgtcatacaccacgaac 184  Q
    ||||| || |||||| |||||  ||||||||||||    
T  35214386 gttcccgtgatgttaacatgt--tacaccacgaac 35214354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 184
Target Start/End: Complemental strand, 29523860 - 29523724
Alignment:
Q  50 gtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaactccatatttagatgtaactaaggat 149  Q
    |||||||||||||| |||||  | |||||| |||| ||||| | ||| | |||| | ||||||||||| ||||||||||||||| |||| |  | ||| |    
T  29523860 gtaggtaaacgatccctcaacagtcgccaagcaaggatagaaacttttaaaggaacctgtttatgccaaattaactccatattttgatgaacatgaggtt 29523761  T
Q  150 gttcctgtaatgttagcatgtc--atacaccacgaac 184  Q
    |||||||| |||| | || |||  |||||||||||||    
T  29523760 gttcctgtgatgtcaacaagtcatatacaccacgaac 29523724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 138
Target Start/End: Original strand, 11203844 - 11203932
Alignment:
Q  50 gtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaactccatatttagatg 138  Q
    |||||||||||||| |||||  | |||||| |||| ||||| | ||| | |||| | ||||||||||| ||||||||||||||| ||||    
T  11203844 gtaggtaaacgatccctcaacagtcgccaagcaagtatagaaacttttaaaggaacctgtttatgccaaattaactccatattttgatg 11203932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 174
Target Start/End: Original strand, 2364278 - 2364426
Alignment:
Q  26 ccacggtttgccgaatttactttcgtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaact 125  Q
    ||||| |||||| |||| | ||| |||||||| ||||| ||||   | |||||| |||| ||||| | ||| |||||  | ||||||||||| ||||| |    
T  2364278 ccacgatttgccaaattaagttttgtaggtaaccgatccctcagtagtcgccaagcaaggatagatactttgagagggacctgtttatgccaaattaagt 2364377  T
Q  126 ccatatttagatgtaactaaggatgttcctgtaatgttagcatgtcata 174  Q
    |||||||  | |||||||  || || |||||| |||| |||||||||||    
T  2364378 ccatattatggtgtaactggggctgctcctgtgatgtcagcatgtcata 2364426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 174
Target Start/End: Original strand, 7312777 - 7312925
Alignment:
Q  26 ccacggtttgccgaatttactttcgtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaact 125  Q
    ||||| |||||| |||| | ||| |||||||| ||||| ||||   | |||||| |||| ||||| | ||| |||||  | ||||||||||| ||||| |    
T  7312777 ccacgatttgccaaattaagttttgtaggtaaccgatccctcattagtcgccaagcaaggatagatactttgagaggtacctgtttatgccaaattaagt 7312876  T
Q  126 ccatatttagatgtaactaaggatgttcctgtaatgttagcatgtcata 174  Q
    |||||||  | |||||||  || || |||||| |||| |||||||||||    
T  7312877 ccatattatggtgtaactggggctgctcctgtgatgtcagcatgtcata 7312925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 6e-43; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 20 - 203
Target Start/End: Complemental strand, 17765107 - 17764922
Alignment:
Q  20 atgataccacggtttgccgaatttactttcgtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccata 119  Q
    |||||||||||||||||| ||||| |||||||||||||| |||| |||||  |||||||| |||| ||||||| |||||||||||| |||||||||||||    
T  17765107 atgataccacggtttgccaaatttgctttcgtaggtaaatgatccctcaatagccgccaagcaagaatagagactttaagaggagcctgtttatgccata 17765008  T
Q  120 ttaactccatatttagatgtaactaaggatgttcctgtaatgttagcatgtcatacaccac---gaactgaatacccgccaccctga 203  Q
    ||||||||||||||  || |||| |||||||||| ||| |||| | |||||||||||| ||   ||||||||||| |||||||||||    
T  17765007 ttaactccatatttgaatataaccaaggatgttcatgtgatgtcaacatgtcatacac-actgtgaactgaatactcgccaccctga 17764922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 50 - 174
Target Start/End: Original strand, 41207041 - 41207165
Alignment:
Q  50 gtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaactccatatttagatgtaactaaggat 149  Q
    |||||||| ||||| |||| | |||||||| |||| ||||||| ||| |||||| | ||||||||||| ||||||||||||||| ||||||||| |||||    
T  41207041 gtaggtaaccgatccctcagaagccgccaagcaaggatagagactttgagaggaacctgtttatgccaaattaactccatatttggatgtaactgaggat 41207140  T
Q  150 gttcctgtaatgttagcatgtcata 174  Q
    |||||||  |||| |||||||||||    
T  41207141 gttcctgcgatgtcagcatgtcata 41207165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 30 - 203
Target Start/End: Original strand, 28252725 - 28252900
Alignment:
Q  30 ggtttgccgaatttactttcgtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaactccat 129  Q
    |||||||| ||||| | ||||||||||| ||||| |||||| |||||||| |||| ||||| | ||| |||||  | ||||||||||| ||||| |||||    
T  28252725 ggtttgccaaatttcccttcgtaggtaagcgatccctcaaaagccgccaagcaagaatagatacttttagaggtacctgtttatgccaaattaattccat 28252824  T
Q  130 atttagatgtaactaaggatgttcctgtaatgttagcatgtcatacacc--acgaactgaatacccgccaccctga 203  Q
    |  |  |||||||| ||| ||||||||| |||| |||||||||||||||  ||| |||||||| ||||| ||||||    
T  28252825 agatgaatgtaactgaggctgttcctgtgatgtcagcatgtcatacaccctacggactgaataaccgcctccctga 28252900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 50 - 177
Target Start/End: Complemental strand, 38604489 - 38604362
Alignment:
Q  50 gtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaactccatatttagatgtaactaaggat 149  Q
    ||||||||||||||||| ||  || ||||  |||| || || | ||| |||||  ||||||||||||| ||||||||||||||| |||| || | ||| |    
T  38604489 gtaggtaaacgatctcttaacagcagccatgcaaggattgaaacttttagaggtacttgtttatgccagattaactccatattttgatgaaaattaggtt 38604390  T
Q  150 gttcctgtaatgttagcatgtcatacac 177  Q
    |||||||| |||| | ||||||||||||    
T  38604389 gttcctgtgatgtcaacatgtcatacac 38604362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 26 - 174
Target Start/End: Original strand, 4552170 - 4552318
Alignment:
Q  26 ccacggtttgccgaatttactttcgtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaact 125  Q
    ||||| |||||| |||| | ||| |||||||| ||||| |||| | | |||||| |||| ||||| | |||||||||| | | ||||||||| ||||| |    
T  4552170 ccacgatttgccaaattaagttttgtaggtaaccgatccctcagaagtcgccaagcaaggatagatactttaagaggaacctatttatgccaaattaagt 4552269  T
Q  126 ccatatttagatgtaactaaggatgttcctgtaatgttagcatgtcata 174  Q
    |||||||  | |||||||  || || |||||| |||| |||||||||||    
T  4552270 ccatattatggtgtaactggggctgctcctgtgatgtcagcatgtcata 4552318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 87; Significance: 1e-41; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 20 - 199
Target Start/End: Complemental strand, 15958958 - 15958777
Alignment:
Q  20 atgataccacggtttgccgaatttactttcgtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccata 119  Q
    ||||||||| |||||||| ||||| |||||||||||||| |||| |||||| |||||||| |||| ||||||| |||||||||| | |||||||||||||    
T  15958958 atgataccatggtttgccaaatttgctttcgtaggtaaatgatccctcaaaagccgccaagcaagaatagagactttaagaggaacctgtttatgccata 15958859  T
Q  120 ttaactccatatttagatgtaactaaggatgttcctgtaatgttagcatgtc--atacaccacgaactgaatacccgccacc 199  Q
    |||||| ||||||| ||||||||| | | ||||||||| |||| ||||||||  | ||||| |||||||||||||| |||||    
T  15958858 ttaacttcatatttggatgtaactgaagttgttcctgtgatgtcagcatgtcagacacaccgcgaactgaatacccaccacc 15958777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 50 - 174
Target Start/End: Complemental strand, 18651349 - 18651225
Alignment:
Q  50 gtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaactccatatttagatgtaactaaggat 149  Q
    |||||||| ||||| |||| | | |||||| |||| ||||||| ||| |||||| | ||||||||||| ||||||||||||||| ||| |||||  || |    
T  18651349 gtaggtaaccgatccctcagaagtcgccaagcaaggatagagactttgagaggaacctgtttatgccaaattaactccatattttgatctaactggggct 18651250  T
Q  150 gttcctgtaatgttagcatgtcata 174  Q
    | |||||| |||| |||||||||||    
T  18651249 gctcctgtgatgtcagcatgtcata 18651225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 26 - 132
Target Start/End: Original strand, 2553638 - 2553744
Alignment:
Q  26 ccacggtttgccgaatttactttcgtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaact 125  Q
    |||||||||||| ||||   ||| |||||||| |||||| ||||| | |||||| |||| ||||| | ||| |||||| | ||||||||||| |||||||    
T  2553638 ccacggtttgccaaattattttttgtaggtaaccgatctttcaaaagtcgccaagcaaggatagatactttgagaggaacctgtttatgccaaattaact 2553737  T
Q  126 ccatatt 132  Q
    |||||||    
T  2553738 ccatatt 2553744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 81 - 174
Target Start/End: Complemental strand, 24767508 - 24767415
Alignment:
Q  81 caagcatagagattttaagaggagcttgtttatgccatattaactccatatttagatgtaactaaggatgttcctgtaatgttagcatgtcata 174  Q
    |||| ||||||| ||| | |||| | ||||||||| | ||||||||||||||| |||||||||| || || |||||| |||| |||||||||||    
T  24767508 caaggatagagactttgataggaacctgtttatgcaaaattaactccatattttgatgtaactagggctgctcctgtgatgtcagcatgtcata 24767415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 26 - 178
Target Start/End: Complemental strand, 14373130 - 14372978
Alignment:
Q  26 ccacggtttgccgaatttactttcgtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaact 125  Q
    |||||||||||| ||||| ||||||||||||| |  |  |||||| || ||||| |||| ||||| | ||| |||||  | ||||||||||| ||||| |    
T  14373130 ccacggtttgccaaatttcctttcgtaggtaagccgttcctcaaaagctgccaagcaagaatagatacttttagaggtacctgtttatgccaaattaaat 14373031  T
Q  126 ccatatttagatgtaactaaggatgttcctgtaatgttagcatgtcatacacc 178  Q
    |||||     |||||||| ||| ||||||||  |||| |||||||||||||||    
T  14373030 ccatagaagaatgtaactgaggctgttcctgggatgtcagcatgtcatacacc 14372978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 184
Target Start/End: Complemental strand, 21630222 - 21630086
Alignment:
Q  50 gtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaactccatatttagatgtaactaaggat 149  Q
    |||||||||||||| |||||  | ||||||||||| ||||| | ||| | |||| | || |||||||| ||||||||||||||| |||| |  | ||| |    
T  21630222 gtaggtaaacgatccctcaatagtcgccaaacaaggatagaaacttttaaaggaacctggttatgccaaattaactccatattttgatgaacatgaggtt 21630123  T
Q  150 gttcctgtaatgttagcatgtc--atacaccacgaac 184  Q
    |||||||| |||| | || |||  |||||||||||||    
T  21630122 gttcctgtgatgtcaacaagtcatatacaccacgaac 21630086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 184
Target Start/End: Complemental strand, 20883148 - 20883012
Alignment:
Q  50 gtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaactccatatttagatgtaactaaggat 149  Q
    |||||||||| ||| |||||  |||||||| |||| ||||| | ||| | |||| | | ||||||||| ||||||||||||||| |||| |  |  || |    
T  20883148 gtaggtaaacaatccctcaacagccgccaagcaaggatagaaacttttaaaggaacctatttatgccagattaactccatattttgatgaacatgtggtt 20883049  T
Q  150 gttcctgtaatgttagcatgtc--atacaccacgaac 184  Q
    |||||||| |||| | ||||||  |||||||||||||    
T  20883048 gttcctgtgatgtcaacatgtcatatacaccacgaac 20883012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 138
Target Start/End: Complemental strand, 17606449 - 17606361
Alignment:
Q  50 gtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaactccatatttagatg 138  Q
    ||||||||| |||| |||||  | |||||| |||| ||||| | ||| | |||| | ||||||||||| ||||||||||||||| ||||    
T  17606449 gtaggtaaatgatccctcaacagtcgccaagcaaggatagaaacttttaaaggaacctgtttatgccaaattaactccatattttgatg 17606361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 27 - 203
Target Start/End: Complemental strand, 47623215 - 47623037
Alignment:
Q  27 cacggtttgccgaatttactttcgtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaactc 126  Q
    ||||||||||| ||||| | ||||||||||| || || |||||| |||||||| |||| ||||| | ||| |||||  | ||||||||||| ||||| ||    
T  47623215 cacggtttgccaaatttcccttcgtaggtaagcggtccctcaaaagccgccaagcaagaatagatactttgagaggtacctgtttatgccaaattaattc 47623116  T
Q  127 catatttagatgtaactaaggatgttcctgtaatgttagcatgtcataca--ccacgaactgaatacccgccaccctga 203  Q
    ||||| |  |||||||| ||| ||||||||| |||| |||||||||||||  ||| | |||||||||||||| ||||||    
T  47623115 catatatgaatgtaactgaggttgttcctgtgatgtcagcatgtcatacaccccatggactgaatacccgcctccctga 47623037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 26 - 174
Target Start/End: Original strand, 51052481 - 51052629
Alignment:
Q  26 ccacggtttgccgaatttactttcgtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaact 125  Q
    ||||| |||||| |||| | ||| |||||||| ||||| |||| | | |||||| |||| ||||| | ||| |||||| | ||||||||||| ||||| |    
T  51052481 ccacgatttgccaaattaagttttgtaggtaaccgatccctcagaagtcgccaagcaaggatagatactttgagaggaacctgtttatgccaaattaagt 51052580  T
Q  126 ccatatttagatgtaactaaggatgttcctgtaatgttagcatgtcata 174  Q
    |||||||  | |||||||  || || |||||| |||| |||||||||||    
T  51052581 ccatattatggtgtaactggggctgctcctgtgatgtcagcatgtcata 51052629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 174
Target Start/End: Complemental strand, 11909244 - 11909096
Alignment:
Q  26 ccacggtttgccgaatttactttcgtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaact 125  Q
    ||||| |||||| |||| | ||| |||||||| ||||| |||| | | |||||| |||  ||||| | ||| |||||| | ||||||||||| ||||| |    
T  11909244 ccacgatttgccaaattaagttttgtaggtaaccgatccctcagaagtcgccaagcaatgatagatactttgagaggaacctgtttatgccaaattaagt 11909145  T
Q  126 ccatatttagatgtaactaaggatgttcctgtaatgttagcatgtcata 174  Q
    |||||||  | |||||||  || || |||||| |||| |||||||||||    
T  11909144 ccatattatggtgtaactggggctgctcctgtgatgtcagcatgtcata 11909096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 138
Target Start/End: Complemental strand, 16917924 - 16917836
Alignment:
Q  50 gtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaactccatatttagatg 138  Q
    |||||||| ||||| |||||  | |||||| |||| ||||| | ||| | |||| | ||||||||||| ||||||||||||||| ||||    
T  16917924 gtaggtaagcgatccctcaacagtcgccaagcaaggatagaaacttttaaaggaacctgtttatgccaaattaactccatattttgatg 16917836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 138
Target Start/End: Original strand, 43388392 - 43388480
Alignment:
Q  50 gtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaactccatatttagatg 138  Q
    |||||||||||||| |||||    |||||| |||| ||||| | ||| | |||| | ||||||||||| ||||||||||||||| ||||    
T  43388392 gtaggtaaacgatccctcaacaatcgccaagcaaggatagaaacttttaaaggaacctgtttatgccaaattaactccatattttgatg 43388480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 46 - 174
Target Start/End: Original strand, 3273 - 3401
Alignment:
Q  46 tttcgtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaactccatatttagatgtaactaa 145  Q
    |||||||||||| |||||||||||| | | |||| |||| ||||| | |||||||||| | ||||||||||| ||||||||||||||  | ||||||||     
T  3273 tttcgtaggtaaccgatctctcaaaagtctccaagcaaggatagaaactttaagaggaacctgtttatgccaaattaactccatattatggtgtaactag 3372  T
Q  146 ggatgttcctgtaatgttagcatgtcata 174  Q
    || || |||||| |||| ||||| |||||    
T  3373 ggttgctcctgtgatgtcagcatatcata 3401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 26 - 174
Target Start/End: Complemental strand, 11277391 - 11277243
Alignment:
Q  26 ccacggtttgccgaatttactttcgtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaact 125  Q
    |||||||||||| ||||   |||||||||||| |||||||||||| | |||||| |||| ||||| | ||| |||||| | ||||||||||| |||||||    
T  11277391 ccacggtttgccaaattatttttcgtaggtaaccgatctctcaaaagtcgccaagcaaggatagatactttgagaggaacctgtttatgccaaattaact 11277292  T
Q  126 ccatatttagatgtaactaaggatgttcctgtaatgttagcatgtcata 174  Q
    |||||||  | |||||||  || || |||||| |||| ||||| |||||    
T  11277291 ccatattatggtgtaactggggttgctcctgtgatgtcagcatatcata 11277243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 26 - 174
Target Start/End: Original strand, 47876984 - 47877132
Alignment:
Q  26 ccacggtttgccgaatttactttcgtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaact 125  Q
    |||||||||||| ||||   ||| ||||||||  ||||||||| | | |||||| |||| ||||| | ||| |||||| | ||||||||||| |||||||    
T  47876984 ccacggtttgccaaattattttttgtaggtaactgatctctcagaagtcgccaagcaaggatagatactttgagaggaacctgtttatgccaaattaact 47877083  T
Q  126 ccatatttagatgtaactaaggatgttcctgtaatgttagcatgtcata 174  Q
    || ||||| |||||||||  || || |||||| |||| |||||||||||    
T  47877084 ccctattttgatgtaactggggctgctcctgtgatgtcagcatgtcata 47877132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 50 - 174
Target Start/End: Complemental strand, 235552 - 235428
Alignment:
Q  50 gtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaactccatatttagatgtaactaaggat 149  Q
    |||||||| ||||| |||| | | |||||| |||| ||||||| ||| ||| || | ||||||||||| ||||||||||||||| |||||||||  || |    
T  235552 gtaggtaaccgatccctcagaagtcgccaagcaaggatagagactttgagatgaacctgtttatgccaaattaactccatattttgatgtaactggggct 235453  T
Q  150 gttcctgtaatgttagcatgtcata 174  Q
    | |||||| |||| | |||||||||    
T  235452 gctcctgtgatgtcaacatgtcata 235428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 26 - 193
Target Start/End: Original strand, 17720636 - 17720805
Alignment:
Q  26 ccacggtttgccgaatttactttcgtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaact 125  Q
    |||||||||||| ||||  |||| |||||||| ||||| |||| | | |||||  |||| ||||| | ||| |||||| | ||| ||||||| |||||||    
T  17720636 ccacggtttgccaaattatcttttgtaggtaaccgatccctcagaagtcgccatgcaaggatagaaactttgagaggaacctgtgtatgccaaattaact 17720735  T
Q  126 ccatatttagatgtaactaaggatgttcctgtaatgttagcatgtcata--caccacgaactgaataccc 193  Q
    |||  ||| ||||||| | ||| || |||||| |||| |||||||||||  | |||||||| ||||||||    
T  17720736 ccaagttttgatgtaagtgaggctgctcctgtgatgtcagcatgtcataggctccacgaacggaataccc 17720805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 130
Target Start/End: Original strand, 29967996 - 29968080
Alignment:
Q  46 tttcgtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaactccata 130  Q
    |||||||||||| |||||||||||| | |  ||| |||| ||||| | ||| |||||| | ||||||||||| ||||||||||||    
T  29967996 tttcgtaggtaaccgatctctcaaaagtcctcaagcaaggatagatactttgagaggaacctgtttatgccaaattaactccata 29968080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 138
Target Start/End: Original strand, 25619507 - 25619572
Alignment:
Q  73 ccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaactccatatttagatg 138  Q
    ||||||| |||| ||||| | ||| | |||| | ||||||||||||||||||||||||||| ||||    
T  25619507 ccgccaagcaaggatagaaacttttaaaggaacctgtttatgccatattaactccatattttgatg 25619572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 174
Target Start/End: Complemental strand, 4938267 - 4938119
Alignment:
Q  26 ccacggtttgccgaatttactttcgtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaact 125  Q
    ||||| |||||| |||| | ||| |||||||| ||||| ||||   | |||||| |||| ||||||| ||| |||||  | ||||||||||| ||||| |    
T  4938267 ccacgatttgccaaattaagttttgtaggtaaccgatccctcattagtcgccaagcaaggatagagactttgagagggacctgtttatgccaaattaagt 4938168  T
Q  126 ccatatttagatgtaactaaggatgttcctgtaatgttagcatgtcata 174  Q
    ||| |||  | |||||||  || || |||||| |||| |||||||||||    
T  4938167 ccacattatggtgtaactggggctgctcctgtgatgtcagcatgtcata 4938119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 50 - 174
Target Start/End: Original strand, 42928156 - 42928280
Alignment:
Q  50 gtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaactccatatttagatgtaactaaggat 149  Q
    |||| ||| ||||| |||| | ||||||||||||| ||||||| ||| |||||| | ||||||| ||| ||||||||||||||| |||||||||  || |    
T  42928156 gtagttaaccgatccctcagaagccgccaaacaaggatagagactttgagaggaacctgtttataccaaattaactccatatttggatgtaactggggct 42928255  T
Q  150 gttcctgtaatgttagcatgtcata 174  Q
    |||||||  |||| |||||||||||    
T  42928256 gttcctgcgatgtcagcatgtcata 42928280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 26 - 174
Target Start/End: Original strand, 23238385 - 23238533
Alignment:
Q  26 ccacggtttgccgaatttactttcgtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaact 125  Q
    |||||||||||| ||||   |||||||||||| |||||||||||| | | |||| |||| ||||| | ||| |||||| | | ||||||||| |||||||    
T  23238385 ccacggtttgccaaattacttttcgtaggtaaccgatctctcaaaagtctccaagcaaggatagaaactttgagaggaacctatttatgccaaattaact 23238484  T
Q  126 ccatatttagatgtaactaaggatgttcctgtaatgttagcatgtcata 174  Q
    |||||||  | |||||||  || || |||||| |||||||||| |||||    
T  23238485 ccatattatggtgtaactggggttgctcctgtgatgttagcatatcata 23238533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 26 - 174
Target Start/End: Complemental strand, 28535814 - 28535666
Alignment:
Q  26 ccacggtttgccgaatttactttcgtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaact 125  Q
    |||||||||||| ||||   ||| |||||||| ||||| |||| | | |||||| |||| ||||| | ||| |||||| | ||| ||||||| |||||||    
T  28535814 ccacggtttgccaaattattttttgtaggtaaccgatccctcagaagtcgccaagcaaggatagaaactttgagaggaacctgtgtatgccaaattaact 28535715  T
Q  126 ccatatttagatgtaactaaggatgttcctgtaatgttagcatgtcata 174  Q
    |||| ||| ||||||||| ||| || |||||| |||| |||||||||||    
T  28535714 ccatgttttgatgtaactgaggctgctcctgtgatgtcagcatgtcata 28535666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 132
Target Start/End: Original strand, 8228028 - 8228133
Alignment:
Q  27 cacggtttgccgaatttactttcgtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaactc 126  Q
    ||||||||||| ||||   |||||||||||| |||||||||||| | | |||| |||| ||||| | ||| |||||| | |||||||| || ||||||||    
T  8228028 cacggtttgccaaattacttttcgtaggtaaccgatctctcaaaagtctccaagcaaggatagatactttgagaggaacctgtttatgtcaaattaactc 8228127  T
Q  127 catatt 132  Q
    ||||||    
T  8228128 catatt 8228133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 26 - 174
Target Start/End: Original strand, 12825200 - 12825348
Alignment:
Q  26 ccacggtttgccgaatttactttcgtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaact 125  Q
    ||||| |||||| |||| | ||| |||||||| ||||| |||| | | |||||| |||| ||| | | ||| |||||| ||||||||||||| ||||| |    
T  12825200 ccacgatttgccaaattaagttttgtaggtaaccgatccctcagaagtcgccaagcaaggatacatactttgagaggaacttgtttatgccaaattaagt 12825299  T
Q  126 ccatatttagatgtaactaaggatgttcctgtaatgttagcatgtcata 174  Q
    |||||||  | |||||||  || || |||||| |||| |||||||||||    
T  12825300 ccatattatggtgtaactggggctgctcctgtgatgtcagcatgtcata 12825348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 184
Target Start/End: Complemental strand, 8300297 - 8300161
Alignment:
Q  50 gtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaactccatatttagatgtaactaaggat 149  Q
    |||||||| ||||| |||||  | ||||||||||| ||||| | ||| | |||| | ||||||||||| ||||||||||||||| |||| |  | ||| |    
T  8300297 gtaggtaagcgatccctcaacagtcgccaaacaaggatagaaacttttaaaggaacctgtttatgccaaattaactccatattttgatgaacatgaggtt 8300198  T
Q  150 gttcctgtaatgttagcatgtcata--caccacgaac 184  Q
    |||||||| |||| | || ||||||  ||||||||||    
T  8300197 gttcctgtgatgtcaacaggtcatatgcaccacgaac 8300161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 174
Target Start/End: Complemental strand, 30732453 - 30732305
Alignment:
Q  26 ccacggtttgccgaatttactttcgtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaact 125  Q
    ||||| |||||| |||| | ||| |||||||| ||||| |||| | | |||||| |||  ||||| | ||| |||||| | ||||||||||| ||||| |    
T  30732453 ccacgatttgccaaattaagttttgtaggtaaccgatccctcagaagtcgccaagcaaagatagatactttgagaggaacctgtttatgccaaattaagt 30732354  T
Q  126 ccatatttagatgtaactaaggatgttcctgtaatgttagcatgtcata 174  Q
    |||||||  | |||||||  || || |||||| |||| |||||||||||    
T  30732353 ccatattatggtgtaactggggctgctcctgtgatgtcagcatgtcata 30732305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 174
Target Start/End: Complemental strand, 35983882 - 35983782
Alignment:
Q  74 cgccaaacaagcatagagattttaagaggagcttgtttatgccatattaactccatatttagatgtaactaaggatgttcctgtaatgttagcatgtcat 173  Q
    |||||| |||| ||||| | ||| |||||| | ||| || |||| ||||||||||| ||| ||||||||| ||| || |||||| |||| ||||||||||    
T  35983882 cgccaagcaaggatagatactttgagaggaacctgtgtaagccaaattaactccatgttttgatgtaactgaggctgctcctgtgatgtcagcatgtcat 35983783  T
Q  174 a 174  Q
    |    
T  35983782 a 35983782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 184
Target Start/End: Complemental strand, 33385489 - 33385353
Alignment:
Q  50 gtaggtaaacgatctctcaaatgccgccaaacaagcatagaga-ttttaagaggagcttgtttatgccatattaactccatatttagatgtaactaagga 148  Q
    |||||||||||||| |||||  | |||||| |||| ||||| | ||||||| ||| | ||||||||||| ||||||||||||||| |||| |  | |||     
T  33385489 gtaggtaaacgatccctcaacagtcgccaagcaaggatagaaacttttaag-ggaacctgtttatgccaaattaactccatattttgatgaatatgaggt 33385391  T
Q  149 tgttcctgtaatgttagcatgtc--atacaccacgaac 184  Q
    ||||||||| |||| | || |||  |||||||||||||    
T  33385390 tgttcctgtgatgtcaacaagtcatatacaccacgaac 33385353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 184
Target Start/End: Complemental strand, 18359207 - 18359071
Alignment:
Q  50 gtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaactccatatttagatgtaactaaggat 149  Q
    |||||||||||||| |||||   ||||||| |||| || || | ||| | |||| | ||||||||| | ||||||||||||||| |||| |  | ||| |    
T  18359207 gtaggtaaacgatccctcaacaaccgccaagcaaggattgaaacttttaaaggaacctgtttatgctagattaactccatattttgatgaacatgaggtt 18359108  T
Q  150 gttcctgtaatgttagcatgtc--atacaccacgaac 184  Q
    |||||||| |||| | ||||||  |||||||||||||    
T  18359107 gttcctgtgatgtcaacatgtcatatacaccacgaac 18359071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 184
Target Start/End: Original strand, 27767067 - 27767203
Alignment:
Q  50 gtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaactccatatttagatgtaactaaggat 149  Q
    |||||||||||||| |||||  | |||||| |||| ||| | | ||| | |||| | ||||||||||| ||||||||||||||| |||| |  | ||| |    
T  27767067 gtaggtaaacgatccctcaacagtcgccaagcaaggatataaacttttaaaggaacctgtttatgccaaattaactccatattttgatgaacatgaggtt 27767166  T
Q  150 gttcctgtaatgttagcatgtc--atacaccacgaac 184  Q
    |||||||| |||| | || |||  |||||||||||||    
T  27767167 gttcctgtgatgtcaacaagtcatatacaccacgaac 27767203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 138
Target Start/End: Complemental strand, 25857539 - 25857451
Alignment:
Q  50 gtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaactccatatttagatg 138  Q
    |||||||| ||||| |||||  | |||||| |||| ||||| | ||| | |||| | ||||||||||| ||||||||||||||| ||||    
T  25857539 gtaggtaagcgatccctcaacagtcgccaagcaaggatagaaacttttaaaggaacctgtttatgccaaattaactccatattttgatg 25857451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 174
Target Start/End: Original strand, 31641584 - 31641660
Alignment:
Q  98 agaggagcttgtttatgccatattaactccatatttagatgtaactaaggatgttcctgtaatgttagcatgtcata 174  Q
    |||||| | ||| ||||||| ||||||||||| ||| ||||||| | ||| || |||||| |||| |||||||||||    
T  31641584 agaggaacctgtgtatgccaaattaactccatgttttgatgtaagtgaggctgctcctgtgatgtcagcatgtcata 31641660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 29 - 203
Target Start/End: Complemental strand, 11587334 - 11587158
Alignment:
Q  29 cggtttgccgaatttactttcgtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaactcca 128  Q
    ||||||||| ||||| ||||||||||||||||||  |||| | |||||||| |||| ||||| | ||| | |||    | ||||||||| ||||||||||    
T  11587334 cggtttgccaaattttctttcgtaggtaaacgattcctcagaagccgccaagcaagaatagatactttgataggtatctatttatgccaaattaactcca 11587235  T
Q  129 tatttagatgtaactaaggatgttcctgtaatgttagcatgtcat--acaccacgaactgaatacccgccaccctga 203  Q
    ||  | |||| |||| ||| ||||||||| |||| ||||||||||  |||||||  |||||||| ||||| ||||||    
T  11587234 tagatggatgcaactgaggctgttcctgtgatgtcagcatgtcatacacaccacagactgaatatccgcctccctga 11587158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 26 - 174
Target Start/End: Original strand, 7403914 - 7404062
Alignment:
Q  26 ccacggtttgccgaatttactttcgtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaact 125  Q
    |||||||||||| ||||   ||| |||||||| ||||| |||| | | |||||| |||| ||||||| ||| | | || ||||||||||||| |||||||    
T  7403914 ccacggtttgccaaattcttttttgtaggtaaccgatccctcagaagtcgccaagcaaggatagagactttgaaatgaacttgtttatgccaaattaact 7404013  T
Q  126 ccatatttagatgtaactaaggatgttcctgtaatgttagcatgtcata 174  Q
     ||||||| |||||||||  || || |||||| |||| |||||||||||    
T  7404014 tcatattttgatgtaactggggctgctcctgtgatgtcagcatgtcata 7404062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 50 - 138
Target Start/End: Complemental strand, 45472824 - 45472736
Alignment:
Q  50 gtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaactccatatttagatg 138  Q
    |||||||||||||| |||||  | ||||||||||| ||||| | ||| | |||| | ||||||||||| ||||||||||||||| ||||    
T  45472824 gtaggtaaacgatccctcaacagtcgccaaacaaggatagaaacttttaaaggaacctgtttatgccaaattaactccatattttgatg 45472736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 50 - 133
Target Start/End: Complemental strand, 55725801 - 55725718
Alignment:
Q  50 gtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaactccatattt 133  Q
    |||||||| ||||| |||||  |||||||| |||| || || | ||| |||||| ||||||||||||| |||||||||||||||    
T  55725801 gtaggtaagcgatccctcaatagccgccaagcaaggattgaaacttttagaggaacttgtttatgccaaattaactccatattt 55725718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 131
Target Start/End: Original strand, 19755269 - 19755373
Alignment:
Q  27 cacggtttgccgaatttactttcgtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaactc 126  Q
    ||||||||||| ||||   ||| |||||||| ||||||||||   | |||||| |||| ||||| | ||| |||||| | ||||||||||| ||||||||    
T  19755269 cacggtttgccaaattattttttgtaggtaaccgatctctcaggagtcgccaagcaaggatagatactttgagaggaacctgtttatgccaaattaactc 19755368  T
Q  127 catat 131  Q
    |||||    
T  19755369 catat 19755373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 131
Target Start/End: Complemental strand, 19784537 - 19784433
Alignment:
Q  27 cacggtttgccgaatttactttcgtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaactc 126  Q
    ||||||||||| ||||   ||| |||||||| ||||||||||   | |||||| |||| ||||| | ||| |||||| | ||||||||||| ||||||||    
T  19784537 cacggtttgccaaattattttttgtaggtaaccgatctctcaggagtcgccaagcaaggatagatactttgagaggaacctgtttatgccaaattaactc 19784438  T
Q  127 catat 131  Q
    |||||    
T  19784437 catat 19784433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 132
Target Start/End: Original strand, 15740246 - 15740328
Alignment:
Q  50 gtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaactccatatt 132  Q
    |||||||| ||||||| |||| | | |||| |||| ||||| | ||| |||||| | ||||||||||| ||||||||||||||    
T  15740246 gtaggtaaccgatctcgcaaaagtctccaagcaaggatagatactttgagaggaacctgtttatgccaaattaactccatatt 15740328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 128
Target Start/End: Complemental strand, 47686034 - 47685932
Alignment:
Q  26 ccacggtttgccgaatttactttcgtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaact 125  Q
    |||||||||||| ||||   ||| |||||||| |||||||||||| | |||||| |||| ||||| | ||| |||||| | |||||||| || ||||| |    
T  47686034 ccacggtttgccaaattatgttttgtaggtaaccgatctctcaaaagtcgccaagcaaggatagatactttgagaggaacctgtttatgtcaaattaagt 47685935  T
Q  126 cca 128  Q
    |||    
T  47685934 cca 47685932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 143
Target Start/End: Complemental strand, 1828679 - 1828562
Alignment:
Q  26 ccacggtttgccgaatttactttcgtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaact 125  Q
    |||||||||||| ||||   ||| |||||||| | ||||| |||  | | |||| |||| ||||| | ||| |||||| | ||||||||||| |||||||    
T  1828679 ccacggtttgccaaattagtttttgtaggtaacctatctcgcaatagtctccaagcaaggatagatactttgagaggaacctgtttatgccaaattaact 1828580  T
Q  126 ccatatttagatgtaact 143  Q
    |||||||  |||||||||    
T  1828579 ccatattatgatgtaact 1828562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 177
Target Start/End: Complemental strand, 19735804 - 19735735
Alignment:
Q  108 gtttatgccatattaactccatatttagatgtaactaaggatgttcctgtaatgttagcatgtcatacac 177  Q
    |||||||||  |||||||||| |||| ||||||||  ||| ||||||||  |||| ||||||||||||||    
T  19735804 gtttatgcctaattaactccaaattttgatgtaacataggttgttcctgcgatgtcagcatgtcatacac 19735735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 174
Target Start/End: Complemental strand, 13271030 - 13270882
Alignment:
Q  26 ccacggtttgccgaatttactttcgtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaact 125  Q
    ||||| |||||| |||| | ||| |||||||| ||||| ||||   | |||||| |||| ||||||| ||| |||||  | ||||||||||| ||||| |    
T  13271030 ccacgatttgccaaattaagttttgtaggtaaccgatccctcattagtcgccaagcaaggatagagactttgagagggacctgtttatgccaaattaagt 13270931  T
Q  126 ccatatttagatgtaactaaggatgttcctgtaatgttagcatgtcata 174  Q
    ||| |||  | |||||||  || || |||||| |||| |||||||||||    
T  13270930 ccacattatggtgtaactggggctgctcctgtgatgtcagcatgtcata 13270882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 174
Target Start/End: Complemental strand, 23642730 - 23642582
Alignment:
Q  26 ccacggtttgccgaatttactttcgtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaact 125  Q
    ||||| |||||| |||| | ||| |||||||| ||||| ||||   | |||||| |||| ||||||| ||| |||||  | ||||||||||| ||||| |    
T  23642730 ccacgatttgccaaattaagttttgtaggtaaccgatccctcattagtcgccaagcaaggatagagactttgagagggacctgtttatgccaaattaagt 23642631  T
Q  126 ccatatttagatgtaactaaggatgttcctgtaatgttagcatgtcata 174  Q
    ||| |||  | |||||||  || || |||||| |||| |||||||||||    
T  23642630 ccacattatggtgtaactggggctgctcctgtgatgtcagcatgtcata 23642582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 118
Target Start/End: Complemental strand, 34137108 - 34137010
Alignment:
Q  20 atgataccacggtttgccgaatttactttcgtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccat 118  Q
    |||||||| ||||||||| ||||| |||||||||||||||||||  ||| | |||||||| |||| ||||||| ||| |||||  | ||||||||||||    
T  34137108 atgataccgcggtttgccaaattttctttcgtaggtaaacgatccatcataagccgccaagcaagaatagagactttgagaggtacctgtttatgccat 34137010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 26 - 174
Target Start/End: Original strand, 13396389 - 13396537
Alignment:
Q  26 ccacggtttgccgaatttactttcgtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaact 125  Q
    |||||||||||| ||||   ||| |||||||| ||||||||||   | |||||| |||| ||||| | ||| |||||| ||||||||||||| |||||||    
T  13396389 ccacggtttgccaaattattttttgtaggtaaccgatctctcaggagtcgccaagcaaggatagatactttgagaggaacttgtttatgccaaattaact 13396488  T
Q  126 ccatatttagatgtaactaaggatgttcctgtaatgttagcatgtcata 174  Q
    ||||||   ||||||| |  || || |||||| |||| |||||||||||    
T  13396489 ccatatgatgatgtaattggggctgctcctgtgatgtcagcatgtcata 13396537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 26 - 128
Target Start/End: Original strand, 32266565 - 32266667
Alignment:
Q  26 ccacggtttgccgaatttactttcgtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaact 125  Q
    |||||||||||| ||||   |||||||||||| |||||||||||| | | |||| |||| ||||| | ||| |||||| | ||||||||||| |||||||    
T  32266565 ccacggtttgccaaattacttttcgtaggtaaccgatctctcaaaagtctccaagcaaggatagatactttgagaggaacctgtttatgccaaattaact 32266664  T
Q  126 cca 128  Q
    |||    
T  32266665 cca 32266667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 184
Target Start/End: Original strand, 37434157 - 37434293
Alignment:
Q  50 gtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaactccatatttagatgtaactaaggat 149  Q
    |||||||||||||| |||||  | |||||| |||| ||||||| ||| | |||| | ||||||||||| ||||||||||||||| |||| |  | ||| |    
T  37434157 gtaggtaaacgatccctcaacagtcgccaagcaagaatagagacttttaaaggaacatgtttatgccaaattaactccatattttgatgaacatgaggtt 37434256  T
Q  150 gttcctgtaatgttagcatgtc--atacaccacgaac 184  Q
    |||||||| |||| | || |||  |||||||||||||    
T  37434257 gttcctgtgatgtcaacaagtcatatacaccacgaac 37434293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 50 - 174
Target Start/End: Original strand, 2170367 - 2170491
Alignment:
Q  50 gtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaactccatatttagatgtaactaaggat 149  Q
    |||||||||||||| |||||  | |||||| |||| ||||| | ||| | |||| | ||||||||||| ||||||||||||||| |||| |  | ||| |    
T  2170367 gtaggtaaacgatccctcaacggtcgccaagcaaggatagaaacttttaaaggaacctgtttatgccagattaactccatattttgatgaacatgaggtt 2170466  T
Q  150 gttcctgtaatgttagcatgtcata 174  Q
    |||||||| |||| | |||||||||    
T  2170467 gttcctgtgatgtcaacatgtcata 2170491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 174
Target Start/End: Original strand, 9922602 - 9922750
Alignment:
Q  26 ccacggtttgccgaatttactttcgtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaact 125  Q
    |||||||||||| ||||  |||| |||||||| ||||| |||| | | || ||  |||| ||||| | ||| |||||| | ||| ||||||| |||||||    
T  9922602 ccacggtttgccaaattatcttttgtaggtaaccgatccctcagaagtcgtcatgcaaggatagaaactttgagaggaacctgtgtatgccaaattaact 9922701  T
Q  126 ccatatttagatgtaactaaggatgttcctgtaatgttagcatgtcata 174  Q
    |||  ||| ||||||| | ||| || |||||| |||| |||||||||||    
T  9922702 ccaagttttgatgtaagtgaggctgctcctgtgatgtcagcatgtcata 9922750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 50 - 177
Target Start/End: Original strand, 13200148 - 13200275
Alignment:
Q  50 gtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaactccatatttagatgtaactaaggat 149  Q
    |||||||||||||| |||||  || ||||| |||| || || | ||| |||||| | ||||||||||| | ||||||||||||| |||| |  | ||| |    
T  13200148 gtaggtaaacgatccctcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccatattttgatgaacatgaggtt 13200247  T
Q  150 gttcctgtaatgttagcatgtcatacac 177  Q
    |||||||| |||| | ||| ||||||||    
T  13200248 gttcctgtgatgtcaacatatcatacac 13200275  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 174
Target Start/End: Original strand, 7924387 - 7924535
Alignment:
Q  26 ccacggtttgccgaatttactttcgtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaact 125  Q
    ||||| |||||| |||| | ||| |||||||| ||||| ||||   | |||||| |||| ||||||| ||| |||||  | ||||||||||| ||||| |    
T  7924387 ccacgatttgccaaattaagttttgtaggtaaccgatccctcattagtcgccaagcaaggatagagactttgagagggacctgtttatgccaaattaagt 7924486  T
Q  126 ccatatttagatgtaactaaggatgttcctgtaatgttagcatgtcata 174  Q
    ||| |||  | |||||||  || || |||||| |||| |||||||||||    
T  7924487 ccacattatggtgtaactggggctgctcctgtgatgtcagcatgtcata 7924535  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 138
Target Start/End: Original strand, 20824321 - 20824409
Alignment:
Q  50 gtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaactccatatttagatg 138  Q
    |||||||| ||||| |||||  | |||||| |||| ||||| | ||| | |||| | ||||||||||| ||||||||||||||| ||||    
T  20824321 gtaggtaagcgatccctcaacagtcgccaagcaaggatagaaacttttaaaggaacctgtttatgccaaattaactccatattttgatg 20824409  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 174
Target Start/End: Complemental strand, 41665460 - 41665360
Alignment:
Q  74 cgccaaacaagcatagagattttaagaggagcttgtttatgccatattaactccatatttagatgtaactaaggatgttcctgtaatgttagcatgtcat 173  Q
    |||||| |||| ||||| | ||| |||||| | ||||||||||| |||||||||||||   ||||||| |  || || |||||| |||| ||||||||||    
T  41665460 cgccaagcaaggatagatactttgagaggaacctgtttatgccaaattaactccatatgatgatgtaattggggctgctcctgtgatgtcagcatgtcat 41665361  T
Q  174 a 174  Q
    |    
T  41665360 a 41665360  T

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Target: scaffold0034 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 174
Target Start/End: Complemental strand, 105982 - 105834
Alignment:
Q  26 ccacggtttgccgaatttactttcgtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaact 125  Q
    ||||| |||||| |||| | ||| |||||||| ||||| ||||   | |||||| |||| ||||||| ||| |||||  | ||||||||||| ||||| |    
T  105982 ccacgatttgccaaattaagttttgtaggtaaccgatccctcattagtcgccaagcaaggatagagactttgagagggacctgtttatgccaaattaagt 105883  T
Q  126 ccatatttagatgtaactaaggatgttcctgtaatgttagcatgtcata 174  Q
    ||| |||  | |||||||  || || |||||| |||| |||||||||||    
T  105882 ccacattatggtgtaactggggctgctcctgtgatgtcagcatgtcata 105834  T

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