View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18616_low_19 (Length: 210)

Name: NF18616_low_19
Description: NF18616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18616_low_19
NF18616_low_19
[»] chr4 (3 HSPs)
chr4 (18-198)||(1600980-1601160)
chr4 (46-111)||(547520-547585)
chr4 (127-160)||(21833765-21833798)
[»] chr5 (2 HSPs)
chr5 (29-150)||(38266943-38267064)
chr5 (126-161)||(28532398-28532433)
[»] chr8 (2 HSPs)
chr8 (51-111)||(5767091-5767151)
chr8 (51-109)||(14003653-14003711)
[»] chr6 (1 HSPs)
chr6 (60-171)||(6588699-6588810)
[»] chr7 (1 HSPs)
chr7 (125-171)||(10615273-10615319)
[»] chr1 (2 HSPs)
chr1 (127-171)||(19467875-19467919)
chr1 (60-148)||(52093395-52093483)


Alignment Details
Target: chr4 (Bit Score: 177; Significance: 1e-95; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 18 - 198
Target Start/End: Original strand, 1600980 - 1601160
Alignment:
Q  18 caatataactatagccagtgaaatatgcgaggtcaagcctcctcaaaggaagattttcctttgcaatagaggagagcaactgatccgagatacgccaata 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  1600980 caatataactatagccagtgaaatatgcgaggtcaagcctcctcaaaggaggattttcctttgcaatagaggagagcaactgatccgagatacgccaata 1601079  T
Q  118 ggacaattcaagacaagtcaaacccttcaaactcaccaatgagtgaatgaaatgattagtaatcaaaattccatattcttg 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1601080 ggacaattcaagacaagtcaaacccttcaaactcaccaatgagtgaatgaaatgattagtaatcaaaattccatattcttg 1601160  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 46 - 111
Target Start/End: Original strand, 547520 - 547585
Alignment:
Q  46 gaggtcaagcctcctcaaaggaagattttcctttgcaatagaggagagcaactgatccgagatacg 111  Q
    |||| ||||| | |||||||||| |  |||| ||||||||||||||||||||  ||||||||||||    
T  547520 gaggacaagctttctcaaaggaatagcttccattgcaatagaggagagcaacatatccgagatacg 547585  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 127 - 160
Target Start/End: Complemental strand, 21833798 - 21833765
Alignment:
Q  127 aagacaagtcaaacccttcaaactcaccaatgag 160  Q
    ||||||||||||||||||||||||||| ||||||    
T  21833798 aagacaagtcaaacccttcaaactcactaatgag 21833765  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 29 - 150
Target Start/End: Complemental strand, 38267064 - 38266943
Alignment:
Q  29 tagccagtgaaatatgcgaggtcaagcctcctcaaaggaagattttcctttgcaatagaggagagcaactgatccgagatacgccaataggacaattcaa 128  Q
    ||||| ||| ||||| ||||| |||| ||| ||||||||||| ||| | ||||||||||||| || || ||||| |||||  ||||  ||||||| ||||    
T  38267064 tagccggtgcaatatccgaggccaaggctcgtcaaaggaagactttgcattgcaatagaggaaaggaagtgatcggagatgtgccagcaggacaaatcaa 38266965  T
Q  129 gacaagtcaaacccttcaaact 150  Q
    ||||||||||| |||| |||||    
T  38266964 gacaagtcaaagcctttaaact 38266943  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 161
Target Start/End: Original strand, 28532398 - 28532433
Alignment:
Q  126 caagacaagtcaaacccttcaaactcaccaatgagt 161  Q
    ||||||||||||||||||| ||||||||||||||||    
T  28532398 caagacaagtcaaacccttgaaactcaccaatgagt 28532433  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 51 - 111
Target Start/End: Complemental strand, 5767151 - 5767091
Alignment:
Q  51 caagcctcctcaaaggaagattttcctttgcaatagaggagagcaactgatccgagatacg 111  Q
    |||||||||||||||||||| ||||| ||||||| |||||||| || ||||| ||||||||    
T  5767151 caagcctcctcaaaggaagactttccattgcaatggaggagagaaattgatctgagatacg 5767091  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 51 - 109
Target Start/End: Original strand, 14003653 - 14003711
Alignment:
Q  51 caagcctcctcaaaggaagattttcctttgcaatagaggagagcaactgatccgagata 109  Q
    |||||||||||||||||||| ||||| ||||||| |||||||| || ||||| ||||||    
T  14003653 caagcctcctcaaaggaagactttccattgcaatggaggagaggaattgatctgagata 14003711  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 171
Target Start/End: Complemental strand, 6588810 - 6588699
Alignment:
Q  60 tcaaaggaagattttcctttgcaatagaggagagcaactgatccgagatacgccaataggacaattcaagacaagtcaaacccttcaaactcaccaatga 159  Q
    |||||||||||  || | ||||||||| | ||||||||| ||| ||||||  | ||   |||||  ||||||||||||||| ||||||||||||||||||    
T  6588810 tcaaaggaagacgtttccttgcaatagtgtagagcaactcatcggagatattcaaagcagacaaaccaagacaagtcaaactcttcaaactcaccaatga 6588711  T
Q  160 gtgaatgaaatg 171  Q
    || ||| |||||    
T  6588710 gtcaattaaatg 6588699  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 125 - 171
Target Start/End: Original strand, 10615273 - 10615319
Alignment:
Q  125 tcaagacaagtcaaacccttcaaactcaccaatgagtgaatgaaatg 171  Q
    |||||||||||||| |||||||||||||||||||||| ||| |||||    
T  10615273 tcaagacaagtcaagcccttcaaactcaccaatgagtcaataaaatg 10615319  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 171
Target Start/End: Complemental strand, 19467919 - 19467875
Alignment:
Q  127 aagacaagtcaaacccttcaaactcaccaatgagtgaatgaaatg 171  Q
    |||| ||||||||||||||||||||| |||||||| ||| |||||    
T  19467919 aagagaagtcaaacccttcaaactcagcaatgagtcaataaaatg 19467875  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 148
Target Start/End: Original strand, 52093395 - 52093483
Alignment:
Q  60 tcaaaggaagattttcctttgcaatagaggagagcaactgatccgagatacgccaataggacaattcaagacaagtcaaacccttcaaa 148  Q
    |||||||||||  || || ||||| ||| |||||||| ||||| || ||||||  | | ||||| ||||||||||||||||| ||||||    
T  52093395 tcaaaggaagaccttgctctgcaagagatgagagcaaatgatctgatatacgcgcagacgacaaatcaagacaagtcaaacctttcaaa 52093483  T

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