View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18616_low_2 (Length: 481)
Name: NF18616_low_2
Description: NF18616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18616_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-113; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 256 - 471
Target Start/End: Complemental strand, 35291061 - 35290846
Alignment:
| Q |
256 |
aatatactttatattatgtctcagtaatgataagtgctgatctatagatattggtaatcatgtaacctgtgtaatacaatctgaagaatctctctaagag |
355 |
Q |
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| T |
35291061 |
aatatactttatattatgtctcagtaatgataagtgctgatctatagatattggtaatcatgtaatctgtgtaatacaatctgaagaatctccctaagag |
35290962 |
T |
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| Q |
356 |
actaagacttaagggagactaaaggatgaaagagaaagaaatgacttagaatactagtgcattttattatacacactcctaatattgcagcaaaatttgg |
455 |
Q |
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| T |
35290961 |
actaagacttaagggagactaaaggatgaaagagaaagaaatgacttagaatactagtgcattttattatacacactcctaatattgcagcaaaatttgg |
35290862 |
T |
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| Q |
456 |
aaaaaaggctattcat |
471 |
Q |
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| T |
35290861 |
aaaaaaggctattcat |
35290846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 74 - 225
Target Start/End: Complemental strand, 35291214 - 35291063
Alignment:
| Q |
74 |
attatggtcattagtaatgaagttctctatttctcatttctttcgagaaatagagaggatcgttactcaactaacagccacaccgagtaggtcgacagac |
173 |
Q |
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| T |
35291214 |
attatggtcattagtaatgaagttctctatttctcatttctttcgagaaatagagaggaccgttactcaactaacagccacaccgagtaggtcgacagac |
35291115 |
T |
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| Q |
174 |
acagatagtatagtagatgtatttgctttgtatgtttatgtaggtatataca |
225 |
Q |
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| T |
35291114 |
acagatagtatagtagatgtgtttgctttgtatgtttatgtaggtatataca |
35291063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 35291316 - 35291260
Alignment:
| Q |
17 |
aaaatgtagatatgatcgaaatcacagttgcacaatgtgattcagccaaagtcacag |
73 |
Q |
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| T |
35291316 |
aaaatgtagatatgatcgaaatcacagttgcacaatgtgattcagccaaagtcacag |
35291260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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