View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18616_low_3 (Length: 479)
Name: NF18616_low_3
Description: NF18616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18616_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 445; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 10 - 462
Target Start/End: Complemental strand, 25710292 - 25709840
Alignment:
| Q |
10 |
aagaaaatcctgaaactttcccatgaagattccgtatgctggtagcaaagtgttctccacagactctattacttcttttctaagctcttcatcataaaca |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
25710292 |
aagaaaatcctgaaactttcccatgaagattccgtatgctggtagcaaagtgttttccacagactctattacttcttttctaagctctttatcataaaca |
25710193 |
T |
|
| Q |
110 |
agccacatggattgttcactacaaatctcctcgaagtgtatgttgaacaaattgagcttgtctatcaatgactcttgtgtaacacccaactcattgctgt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25710192 |
agccacatggattgttcactacaaatctcctcgaagtgtatgttgaacaaattgagcttgtctatcaatgactcttgtgtaacacccaactcattgctgt |
25710093 |
T |
|
| Q |
210 |
caaccttgagaaacctgatcaccttactccacgagtttctatgataaagctcaatgtgttgttggatttttgcttggttttctggaaaccaatcatcacc |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25710092 |
caaccttgagaaacctgatcaccttactccacgagtttctatgataaagctcaatgtgttgttggatttttgcttggttttctggaaaccaatcatcacc |
25709993 |
T |
|
| Q |
310 |
gatatagaagctagaattccagtgtatcttatttaacatttgttctatgcgtttcctattattcatcatgaaaagatgctgcatagcagggtacttgtag |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25709992 |
gatatagaagctagaattccagtgtatcttatttaacatttgttctatgcgtttcctattattcatcatgaaaagatgctgcatagcagggtacttgtag |
25709893 |
T |
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| Q |
410 |
tttttagacttagctatcaattctgtctctaacagtgctatcatccttttaat |
462 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25709892 |
tttttagacttagctatcaattctgtctctaacagtgctatcatccttttaat |
25709840 |
T |
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