View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18616_low_5 (Length: 418)
Name: NF18616_low_5
Description: NF18616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18616_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 1 - 402
Target Start/End: Original strand, 1340965 - 1341366
Alignment:
| Q |
1 |
aagacaagacaatcagaaacaaagttgagagagtgagaagctcttgctttaggaaaatctaaatctccatgagggtatgacaatttatgacaacaaacag |
100 |
Q |
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| T |
1340965 |
aagacaagacaatcagaaacaaagttgagagagtgagaagctcttgctttaggaaaatctaaatctccatgagggtatgacaatttatgacaacaaacag |
1341064 |
T |
|
| Q |
101 |
aatccatctgatatattttcttatagagtttcatccatgaaaactgatgaacatgatggttggaagtattacaagacttgactagtgaatccacacatgt |
200 |
Q |
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| T |
1341065 |
aatccatctgatatattttcttatagagtttcatccatgaaaactgatgaacatgatggttggaagtattacaagacttgactagtgaatccacacatgt |
1341164 |
T |
|
| Q |
201 |
tgaactcaagtctctcttgcataaggatttccatagcgtttcagatgaagttaaagctttgaatctcttgcatgtcatggaaagagagagaattgcatct |
300 |
Q |
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| T |
1341165 |
tgaactcaagtctctcttgcataaggatttccatagcgtttcagatgaagttaaagctttgaatctcttgcatgtcatggaaagagagagaattgcatct |
1341264 |
T |
|
| Q |
301 |
atagggagaagaaggataatagtgaagatgtaatcttgaggtatgttggttattggtgatccactataattttgattataactaacactggtggtttctt |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
1341265 |
atagggagaagaaggataatagtgaagatgtaatcttgaggtatgttggttattggtgatccactataattttgattataactaacactagtggtttctt |
1341364 |
T |
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| Q |
401 |
cc |
402 |
Q |
| |
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|| |
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| T |
1341365 |
cc |
1341366 |
T |
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