View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18616_low_6 (Length: 403)

Name: NF18616_low_6
Description: NF18616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18616_low_6
NF18616_low_6
[»] chr2 (4 HSPs)
chr2 (7-377)||(21021156-21021529)
chr2 (134-250)||(25698445-25698561)
chr2 (57-248)||(20699458-20699649)
chr2 (144-268)||(20712531-20712655)
[»] chr4 (3 HSPs)
chr4 (138-256)||(3565686-3565804)
chr4 (150-256)||(3557680-3557786)
chr4 (203-272)||(53774847-53774916)
[»] chr7 (11 HSPs)
chr7 (203-256)||(660857-660910)
chr7 (204-245)||(18952926-18952967)
chr7 (198-256)||(19604473-19604531)
chr7 (203-272)||(14076685-14076754)
chr7 (203-272)||(14386713-14386782)
chr7 (204-245)||(18982973-18983014)
chr7 (204-245)||(18997619-18997660)
chr7 (204-245)||(19597676-19597717)
chr7 (204-245)||(19645651-19645692)
chr7 (203-243)||(9807831-9807871)
chr7 (153-265)||(26256732-26256844)
[»] scaffold0097 (1 HSPs)
scaffold0097 (144-268)||(16370-16494)
[»] chr1 (1 HSPs)
chr1 (196-256)||(39379071-39379131)
[»] scaffold0649 (1 HSPs)
scaffold0649 (165-268)||(5407-5510)


Alignment Details
Target: chr2 (Bit Score: 319; Significance: 1e-180; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 7 - 377
Target Start/End: Complemental strand, 21021529 - 21021156
Alignment:
Q  7 atgtcgaagaatatggttcagatgaaagacctcgttaaagtttggttaaaattatctcacttgatctggggaaggagacatacatgcaattgtcgccccc 106  Q
    |||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  21021529 atgttgaaaaatatggttcagatgaaagacctcattaaagtttggttaaaattatctcacttgatctggggaaggagacatacatgcaattgtcgccccg 21021430  T
Q  107 tcatgattttgacgaagttccatattttgctccaactgtttgagtgttgatggaatgtcttt-gttttacttattgttcaaaggaatataattttactat 205  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  21021429 tcatgattttgacgaagttccatattttgctccaactgtttgcgtgttgatggaatgtcttttgttttacttattattcaaaggaatataattttactat 21021330  T
Q  206 atggcagatgaaggaatttagagttgaaaagtcatggactaaattacttaagtttagctatcagaattatgttttctatggatattatggatattgttat 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  21021329 atggcagatgaaggaatttagagttgaaaagtcatggactaaattgcttaagtttagctatcagaattatgttttctatggatgttatggatattgttat 21021230  T
Q  306 ttgctgccattgca--attttgagaatggtgatatattgatattggcaagcgatgaccaacgacgagtaattct 377  Q
    ||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21021229 ttgctgccattgcatgtttttgagaatggtgatatattgatattggcaagcgatgaccaacgacgagtaattct 21021156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 134 - 250
Target Start/End: Original strand, 25698445 - 25698561
Alignment:
Q  134 tgctccaactgtttgagtgttgatggaatgtctttgttttacttattgttcaaaggaatataattttactatatggcagatgaaggaatttagagttgaa 233  Q
    |||||||||| |||| |||||||||| ||||||||||||| || |||  |||| |  || |||||||  ||||||||| ||||  |||||| ||||||||    
T  25698445 tgctccaactctttgcgtgttgatgggatgtctttgtttttctcattactcaaggttatctaattttgttatatggcaaatgagagaatttggagttgaa 25698544  T
Q  234 aagtcatggactaaatt 250  Q
     | || |||||||||||    
T  25698545 gactcttggactaaatt 25698561  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 57 - 248
Target Start/End: Complemental strand, 20699649 - 20699458
Alignment:
Q  57 attatctcacttgatctggggaaggagacatacatgcaattgtcgccccctcatgattttgacgaagttccatattttgctccaactgtttgagtgttga 156  Q
    ||||||||||||||| |||| |  ||||| |||| |||| ||   || ||||  |||||||| ||||| |||  ||||   |||| |||||  ||| |||    
T  20699649 attatctcacttgatttgggaacagagacttacacgcaaatgctccctcctcgagattttgatgaagtgccactttttatgccaattgtttccgtgctga 20699550  T
Q  157 tggaatgtctttgttttacttattgttcaaaggaatataattttactatatggcagatgaaggaatttagagttgaaaagtcatggactaaa 248  Q
    || | |||||||||||||   ||||||| |||||| ||||||||  ||||||||||||||  |||||| ||||||||  ||| |||||||||    
T  20699549 tgaattgtctttgttttagccattgttccaaggaaaataattttgttatatggcagatgagagaatttcgagttgaagcgtcttggactaaa 20699458  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 268
Target Start/End: Complemental strand, 20712655 - 20712531
Alignment:
Q  144 gtttgagtgttgatggaatgtctttgttttacttattgttcaaaggaatataattttactatatggcagatgaaggaatttagagttgaaaagtcatgga 243  Q
    ||||| ||||||||||| |||||||||||| || |   |||  | | ||| ||||||  ||||||| |||||| |||||||  ||||||| |||| ||||    
T  20712655 gtttgtgtgttgatggactgtctttgtttttctcaccattcggacggatacaattttgttatatggaagatgagggaatttgcagttgaagagtcttgga 20712556  T
Q  244 ctaaattacttaagtttagctatca 268  Q
     |||||| || ||||||||||||||    
T  20712555 ttaaattgctaaagtttagctatca 20712531  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 138 - 256
Target Start/End: Original strand, 3565686 - 3565804
Alignment:
Q  138 ccaactgtttgagtgttgatggaatgtctttgttttacttattgttcaaaggaatataattttactatatggcagatgaaggaatttagagttgaaaagt 237  Q
    ||||||||| | ||||||| ||| || ||||||||| |||||||||  ||| ||    |||||| |||||||||||||||||||||| | |||||| |||    
T  3565686 ccaactgttggtgtgttgagggactgcctttgtttttcttattgttataagaaaaccgattttattatatggcagatgaaggaatttggggttgaagagt 3565785  T
Q  238 catggactaaattacttaa 256  Q
    | |||||| |||| |||||    
T  3565786 cttggactcaatttcttaa 3565804  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 256
Target Start/End: Original strand, 3557680 - 3557786
Alignment:
Q  150 gtgttgatggaatgtctttgttttacttattgttcaaaggaatataattttactatatggcagatgaaggaatttagagttgaaaagtcatggactaaat 249  Q
    ||||||| ||| |||||||||||| |||||| ||  ||||||    |||||| ||||||||| |||||||||||| | |||||| |||| |||||| |||    
T  3557680 gtgttgagggactgtctttgtttttcttattcttacaaggaaaccgattttattatatggcatatgaaggaatttggggttgaagagtcttggactcaat 3557779  T
Q  250 tacttaa 256  Q
    | |||||    
T  3557780 ttcttaa 3557786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 203 - 272
Target Start/End: Original strand, 53774847 - 53774916
Alignment:
Q  203 tatatggcagatgaaggaatttagagttgaaaagtcatggactaaattacttaagtttagctatcagaat 272  Q
    ||||||||| |||||||||||| |||||||| |||| |||||| |||| |||||  |||| |||||||||    
T  53774847 tatatggcaaatgaaggaatttggagttgaagagtcttggactcaattccttaaaattagttatcagaat 53774916  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 203 - 256
Target Start/End: Complemental strand, 660910 - 660857
Alignment:
Q  203 tatatggcagatgaaggaatttagagttgaaaagtcatggactaaattacttaa 256  Q
    |||||||||||||||||||||| |||||||| |||| |||||| |||| |||||    
T  660910 tatatggcagatgaaggaatttcgagttgaagagtcttggactcaattccttaa 660857  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 204 - 245
Target Start/End: Complemental strand, 18952967 - 18952926
Alignment:
Q  204 atatggcagatgaaggaatttagagttgaaaagtcatggact 245  Q
    ||||||||||||||||||||| ||||||| ||||||||||||    
T  18952967 atatggcagatgaaggaatttggagttgacaagtcatggact 18952926  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 198 - 256
Target Start/End: Complemental strand, 19604531 - 19604473
Alignment:
Q  198 tttactatatggcagatgaaggaatttagagttgaaaagtcatggactaaattacttaa 256  Q
    |||| |||||||||||||||||||||| |||||||| | || |||||| |||| |||||    
T  19604531 tttattatatggcagatgaaggaatttggagttgaagactcctggactcaattccttaa 19604473  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 272
Target Start/End: Original strand, 14076685 - 14076754
Alignment:
Q  203 tatatggcagatgaaggaatttagagttgaaaagtcatggactaaattacttaagtttagctatcagaat 272  Q
    ||||||||| |||||||||||| |||||||| | || |||||| |||| |||||  |||| |||||||||    
T  14076685 tatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaattagttatcagaat 14076754  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 272
Target Start/End: Original strand, 14386713 - 14386782
Alignment:
Q  203 tatatggcagatgaaggaatttagagttgaaaagtcatggactaaattacttaagtttagctatcagaat 272  Q
    ||||||||| |||||||||||| |||||||| | || |||||| |||| |||||  |||| |||||||||    
T  14386713 tatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaattagttatcagaat 14386782  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 245
Target Start/End: Complemental strand, 18983014 - 18982973
Alignment:
Q  204 atatggcagatgaaggaatttagagttgaaaagtcatggact 245  Q
    ||||||||||||||||||||| ||||||| ||||| ||||||    
T  18983014 atatggcagatgaaggaatttggagttgacaagtcctggact 18982973  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 245
Target Start/End: Complemental strand, 18997660 - 18997619
Alignment:
Q  204 atatggcagatgaaggaatttagagttgaaaagtcatggact 245  Q
    ||||||||||||||||||||| ||||||| ||||| ||||||    
T  18997660 atatggcagatgaaggaatttggagttgacaagtcctggact 18997619  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 245
Target Start/End: Complemental strand, 19597717 - 19597676
Alignment:
Q  204 atatggcagatgaaggaatttagagttgaaaagtcatggact 245  Q
    |||||||||||||||||||||  ||||||| |||||||||||    
T  19597717 atatggcagatgaaggaatttgaagttgaagagtcatggact 19597676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 245
Target Start/End: Complemental strand, 19645692 - 19645651
Alignment:
Q  204 atatggcagatgaaggaatttagagttgaaaagtcatggact 245  Q
    ||||||||||||||||||||| || ||||| |||||||||||    
T  19645692 atatggcagatgaaggaatttggaattgaagagtcatggact 19645651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 203 - 243
Target Start/End: Original strand, 9807831 - 9807871
Alignment:
Q  203 tatatggcagatgaaggaatttagagttgaaaagtcatgga 243  Q
    |||||||||||||||||||||| |||||||| |||| ||||    
T  9807831 tatatggcagatgaaggaatttggagttgaagagtcttgga 9807871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 153 - 265
Target Start/End: Original strand, 26256732 - 26256844
Alignment:
Q  153 ttgatggaatgtctttgttttacttattgttcaaaggaatataattttactatatggcagatgaaggaatttagagttgaaaagtcatggactaaattac 252  Q
    ||||||||||| ||||||||| || ||  | | |||||| || |||||  | |||||||||||||||| | | ||||| || |||| |||||| |||||     
T  26256732 ttgatggaatgcctttgtttttctcatgataccaaggaaaatgattttgttttatggcagatgaaggagtatggagttcaagagtcttggactcaattat 26256831  T
Q  253 ttaagtttagcta 265  Q
    ||||| |||||||    
T  26256832 ttaagattagcta 26256844  T

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Target: scaffold0097 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 268
Target Start/End: Complemental strand, 16494 - 16370
Alignment:
Q  144 gtttgagtgttgatggaatgtctttgttttacttattgttcaaaggaatataattttactatatggcagatgaaggaatttagagttgaaaagtcatgga 243  Q
    ||||| ||||||||||| |||||||||||| || |   |||  | | ||| ||||||  ||||||| |||||| |||||||  ||||||| |||| ||||    
T  16494 gtttgtgtgttgatggactgtctttgtttttctcaccattcggacggatacaattttgttatatggaagatgagggaatttgcagttgaagagtcttgga 16395  T
Q  244 ctaaattacttaagtttagctatca 268  Q
     |||||| || ||||||||||||||    
T  16394 ttaaattgctaaagtttagctatca 16370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 256
Target Start/End: Complemental strand, 39379131 - 39379071
Alignment:
Q  196 attttactatatggcagatgaaggaatttagagttgaaaagtcatggactaaattacttaa 256  Q
    |||||| |||||||||||||||||||||| | |||||| |||| |||||| |||| |||||    
T  39379131 attttattatatggcagatgaaggaatttggggttgaagagtcttggactcaatttcttaa 39379071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0649 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0649
Description:

Target: scaffold0649; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 165 - 268
Target Start/End: Original strand, 5407 - 5510
Alignment:
Q  165 ctttgttttacttattgttcaaaggaatataattttactatatggcagatgaaggaatttagagttgaaaagtcatggactaaattacttaagtttagct 264  Q
    |||||||||  | ||| ||| |||||| || |||||  |||||||||||||||  |||||||||||||| |||| |||||||  || ||||| ||||| |    
T  5407 ctttgtttttgtcattattctaaggaaaatgattttgttatatggcagatgaaaaaatttagagttgaagagtcttggactatgttccttaaatttagtt 5506  T
Q  265 atca 268  Q
    ||||    
T  5507 atca 5510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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