View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18616_low_7 (Length: 395)
Name: NF18616_low_7
Description: NF18616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18616_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 14 - 379
Target Start/End: Original strand, 11548636 - 11549015
Alignment:
| Q |
14 |
gaaagaatgggagaaactcatattcgacgcaggcttcagcagctataagattacacctatatgcggcttcaaatctatcatcgaagtttatccttaattt |
113 |
Q |
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|||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
11548636 |
gaaagaatgggagaaacttatactcgacgcaggcttcagcagctataagattactcctatatgcggcttcaagtctatcatcgaagtttatccttaattt |
11548735 |
T |
|
| Q |
114 |
tgattagaacttgtttcacttaagttatgattaaaattcaataagtttgtactcataagtcaaattgatagtcacaactgaataatgttaattaaggtgc |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11548736 |
tgattagaacttgtttcacttaagttatgattaaaattcaataagtttgtactcaaaagtcaaattgatagtcacaactgaataatgttaattaaggtgc |
11548835 |
T |
|
| Q |
214 |
tatgttgtttggtattcat--------------gcatgtatgatcttagccagtcaatttctttgaagatgttaaatttggttccaaaattcttcccttt |
299 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
11548836 |
tatgttgtttggtattcatatgcaactttcttaccatgtatgatcttagccagtcaatttctttgaagatgttaaatttggttccaaaattcctcccttt |
11548935 |
T |
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| Q |
300 |
accaatcttcagagactcaatttgtacttcttttcgtatatgcttcttgtttattttgagtattttcccagatgcatttt |
379 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||| |
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| T |
11548936 |
accaatcttcagagactcaatttgtacttcttttcgtagatgcttcttgtttattttgagtattttcctagctgcatttt |
11549015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 14 - 349
Target Start/End: Complemental strand, 11444472 - 11444123
Alignment:
| Q |
14 |
gaaagaatgggagaaactcatattcgacgcaggcttcagcagctataagattacacctatatgcggcttcaaatctatcatcgaagtttatccttaattt |
113 |
Q |
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|||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
11444472 |
gaaagaatgggagaaacttatactcgacgcaggcttcagcagctataagattactcctatatgcggcttcaagtctatcatcgaagtttatccttaattt |
11444373 |
T |
|
| Q |
114 |
tgattagaacttgtttcacttaagttatgattaaaattcaataagtttgtactcataagtcaaattgatagtcacaactgaataatgttaattaaggtgc |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11444372 |
tgattagaacttgtttcacttaagttatgattaaaattcaataagtttgtactcaaaagtcaaattgatagtcacaactgaataatgttaattaaggtgc |
11444273 |
T |
|
| Q |
214 |
tatgttgtttggtattcat--------------gcatgtatgatcttagccagtcaatttctttgaagatgttaaatttggttccaaaattcttcccttt |
299 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |
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| T |
11444272 |
tatgttgtttggtattcatatgcaactttcttaccatgtatgatcttagccagtcaatttctttgaagatgttaaatttggttccaaaattcctcctttt |
11444173 |
T |
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| Q |
300 |
accaatcttcagagactcaatttgtacttcttttcgtatatgcttcttgt |
349 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11444172 |
accaatcttcagagactcaatttgtacttcttttcgtatatgcttcttgt |
11444123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 14 - 232
Target Start/End: Complemental strand, 11441596 - 11441377
Alignment:
| Q |
14 |
gaaagaatgggagaaactcatattcgacgcaggcttcagcagctataagattacacctatatgcggcttcaaatctatcatcgaagtttatccttaattt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11441596 |
gaaagaatgggagaaactcatattcgacgcaggcttcagcagctataagattacacctatatgcggcttcaaatctatcatcgaagtttatccttaattt |
11441497 |
T |
|
| Q |
114 |
t-gattagaacttgtttcacttaagttatgattaaaattcaataagtttgtactcataagtcaaattgatagtcacaactgaataatgttaattaaggtg |
212 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |
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| T |
11441496 |
ttgattagaacttgtttcacttaagttatgattaaaattcaataagtttgtactcaaaagtcaaattgatagtcacaactgaatactgttaattaaggtg |
11441397 |
T |
|
| Q |
213 |
ctatgttgtttggtattcat |
232 |
Q |
| |
|
||||||||| |||||||||| |
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| T |
11441396 |
ctatgttgtatggtattcat |
11441377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 234 - 349
Target Start/End: Complemental strand, 11441326 - 11441211
Alignment:
| Q |
234 |
catgtatgatcttagccagtcaatttctttgaagatgttaaatttggttccaaaattcttccctttaccaatcttcagagactcaatttgtacttctttt |
333 |
Q |
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|||||||||||||||||| ||||||||||| |||||| ||| |||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||| |
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| T |
11441326 |
catgtatgatcttagccaatcaatttctttaaagatgataagtttggttccaaaattcatgcctttaccaatcttcagagacccaatttgtacttctttt |
11441227 |
T |
|
| Q |
334 |
cgtatatgcttcttgt |
349 |
Q |
| |
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| || ||||||||||| |
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| T |
11441226 |
cctagatgcttcttgt |
11441211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 14 - 114
Target Start/End: Original strand, 11508294 - 11508394
Alignment:
| Q |
14 |
gaaagaatgggagaaactcatattcgacgcaggcttcagcagctataagattacacctatatgcggcttcaaatctatcatcgaagtttatccttaattt |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||| |||||||||| ||||| |||||| |
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| T |
11508294 |
gaaagaatgggagaaactcatattcgacgcaggtttcagcagctataagattacacctatatgcggtttcaagtctctcatcgaagtatatccataattt |
11508393 |
T |
|
| Q |
114 |
t |
114 |
Q |
| |
|
| |
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| T |
11508394 |
t |
11508394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 141
Target Start/End: Original strand, 11524509 - 11524636
Alignment:
| Q |
14 |
gaaagaatgggagaaactcatattcgacgcaggcttcagcagctataagattacacctatatgcggcttcaaatctatcatcgaagtttatccttaattt |
113 |
Q |
| |
|
|||||||||| |||||||||| | ||||| |||||||||||||| |||||||| || ||||| |||||||| ||| | || ||||||||||||||||| |
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| T |
11524509 |
gaaagaatggaagaaactcatctatgacgctggcttcagcagctacaagattactccaatatgtggcttcaagtctcttatagaagtttatccttaattc |
11524608 |
T |
|
| Q |
114 |
tgattagaacttgtttcacttaagttat |
141 |
Q |
| |
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| ||||| | ||||| || |||||||| |
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| T |
11524609 |
taattagtagttgttgcaaataagttat |
11524636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 14 - 120
Target Start/End: Original strand, 11487835 - 11487941
Alignment:
| Q |
14 |
gaaagaatgggagaaactcatattcgacgcaggcttcagcagctataagattacacctatatgcggcttcaaatctatcatcgaagtttatccttaattt |
113 |
Q |
| |
|
|||||||||| |||||||||| | ||||| |||||||||||||| |||||||| || ||||| |||||||| || |||| ||||||||||| |||||| |
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| T |
11487835 |
gaaagaatggaagaaactcatctatgacgctggcttcagcagctacaagattactccaatatgtggcttcaagtcactcatagaagtttatccctaattt |
11487934 |
T |
|
| Q |
114 |
tgattag |
120 |
Q |
| |
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| ||||| |
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| T |
11487935 |
taattag |
11487941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 112
Target Start/End: Complemental strand, 11467364 - 11467266
Alignment:
| Q |
14 |
gaaagaatgggagaaactcatattcgacgcaggcttcagcagctataagattacacctatatgcggcttcaaatctatcatcgaagtttatccttaatt |
112 |
Q |
| |
|
|||||||||| |||||||||||| || ||||| ||||| ||||| |||||||| || ||||| |||||||| ||| | || ||||||||||||||||| |
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| T |
11467364 |
gaaagaatggaagaaactcatatatgatgcaggtttcagtagctacaagattactccaatatgtggcttcaagtctcttatagaagtttatccttaatt |
11467266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 113
Target Start/End: Original strand, 34785114 - 34785211
Alignment:
| Q |
16 |
aagaatgggagaaactcatattcgacgcaggcttcagcagctataagattacacctatatgcggcttcaaatctatcatcgaagtttatccttaattt |
113 |
Q |
| |
|
|||||||||| |||||||||| || ||||| || |||||||| || ||||| || || | |||||||| ||| || | |||||||||||||||||| |
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| T |
34785114 |
aagaatgggaaaaactcatatatgatgcaggttttagcagctacaaaattacccccatttctggcttcaagtctctcgttgaagtttatccttaattt |
34785211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 108
Target Start/End: Original strand, 34776948 - 34777040
Alignment:
| Q |
16 |
aagaatgggagaaactcatattcgacgcaggcttcagcagctataagattacacctatatgcggcttcaaatctatcatcgaagtttatcctt |
108 |
Q |
| |
|
|||||||||| |||||||||| || ||||| || |||||||| || ||||| || || | |||||||| || |||||||||||||||||| |
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| T |
34776948 |
aagaatgggaaaaactcatatatgatgcaggttttagcagctacaaaattacccccatttctggcttcaagtcactcatcgaagtttatcctt |
34777040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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