View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18617_high_11 (Length: 377)
Name: NF18617_high_11
Description: NF18617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18617_high_11 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 109 - 377
Target Start/End: Complemental strand, 16699574 - 16699317
Alignment:
| Q |
109 |
gtcaacgaaattatgaagaaagttatgcaaattaacaaatatgattgtttagaattaatgagtttaattttattccttttttacaaataacattttagct |
208 |
Q |
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| T |
16699574 |
gtcaatgaaattatgaagaaagttatgcaaattaacaaatatgattgtttagaattaatgagtttaattttattcctttcttacaaataacattttagct |
16699475 |
T |
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| Q |
209 |
gagtttgatttgtgttcataagagtaagagaaagccaaatgcttaaatattgatccacataatatgaattgaattcttatcaacaaatcaattagt-gaa |
307 |
Q |
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| T |
16699474 |
gagtttgatttgtgttcataagagtaagag------------ttaaatattgatccacataatatgaattgaattcttatcaactaatcaattagtggaa |
16699387 |
T |
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| Q |
308 |
aaattggaactgaagctcctttgtcttcttacaaacactcaacaaaatcatcaaactcgtcgatagcact |
377 |
Q |
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| T |
16699386 |
aaattggaactgaagctcctttgtcttcttacaaacactcaacaaaatcatcaaactcgtcgatagcact |
16699317 |
T |
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