View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18617_high_13 (Length: 323)
Name: NF18617_high_13
Description: NF18617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18617_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 11 - 308
Target Start/End: Complemental strand, 42184224 - 42183927
Alignment:
| Q |
11 |
cataggcatagtacatgtttggattcatgataaatttagaagaaccacagattttagcaaaagctatactttgaagcttaagccttcaacaaaatcacat |
110 |
Q |
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| T |
42184224 |
cataggcatagtacatgtttggattcatgataaatttagaagaatcacagattttagcaaaagctatacttagaagcttaagccttcaacaaaatcacat |
42184125 |
T |
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| Q |
111 |
tggcaacctgatttcatgaaactcatatgatatgaatcaaaacatgtgattctaaacagatatagcaaaagacagatataaactcaccttggttgcttat |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
42184124 |
tggcaacctgatttcatgaaactcatatgatatgaatcaaaacatgtgattctaaacagatatagcaaaatacagatataaactcaccttggttgcttat |
42184025 |
T |
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| Q |
211 |
ttgaaccctcaaagctgctattatgcaaagcaagggaagattggagataaggatgaaggggagtagaagcaagaaaatgtgatgaagatccatatttt |
308 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42184024 |
ttgaaccctcaaagctgctattatgcaaagaaagggaagattggagataaggatgaaggggagtagaagcaagaaaatgtgatgaagatccatatttt |
42183927 |
T |
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