View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18617_high_3 (Length: 768)

Name: NF18617_high_3
Description: NF18617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18617_high_3
NF18617_high_3
[»] chr8 (2 HSPs)
chr8 (18-578)||(34536432-34536990)
chr8 (21-78)||(35507731-35507788)
[»] chr5 (3 HSPs)
chr5 (18-448)||(34196258-34196690)
chr5 (29-160)||(18430321-18430452)
chr5 (435-485)||(3426464-3426514)
[»] chr4 (7 HSPs)
chr4 (20-225)||(52715342-52715547)
chr4 (20-452)||(48088895-48089327)
chr4 (38-505)||(31836802-31837270)
chr4 (20-311)||(6076193-6076490)
chr4 (674-757)||(52715542-52715625)
chr4 (18-352)||(55883152-55883490)
chr4 (528-578)||(55883584-55883634)
[»] chr6 (2 HSPs)
chr6 (41-311)||(28629281-28629552)
chr6 (29-247)||(24796141-24796362)
[»] chr7 (2 HSPs)
chr7 (260-336)||(5030952-5031028)
chr7 (77-151)||(5031478-5031552)


Alignment Details
Target: chr8 (Bit Score: 282; Significance: 1e-157; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 282; E-Value: 1e-157
Query Start/End: Original strand, 18 - 578
Target Start/End: Complemental strand, 34536990 - 34536432
Alignment:
Q  18 ccctcaaggtgtgggaaaaagaaaccaaccaaggaagagcatagagctttctaatgagcgaaagaatagtcgcatgaggatgaaattcattcagatgagc 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||| |||| ||    
T  34536990 ccctcaaggtgtgggaaaaagaaaccaaccaaggaagagcatagagttttctaatgagcgaaataatagtggcatgaggatgaaattcattctgatgggc 34536891  T
Q  118 ttcagcaagcaaatccaaagccgcttgagaatcagattccaaagtaatatattgataaccaaggtctcaagttagttgaagacctcgcaaaattccc--g 215  Q
     ||| ||| |||||| |||||||||||| |||||||||||||||||||  || ||||||||||||| |||| ||||||||||||||| |||||||||  |    
T  34536890 atcaacaatcaaatctaaagccgcttgaaaatcagattccaaagtaatggatcgataaccaaggtcccaagctagttgaagacctcgtaaaattcccgag 34536791  T
Q  216 agttcaacaaacaaattagacgctctaccacagaaacctgcaacaccttgaatccaacctccataatgatttcttaaaaggccgccgaaacctgcactac 315  Q
    |||||| ||||||||||||||||| |||||||  |||| | || |||||||||| |||| || || ||||||||||||| |  | |||||| |||| |      
T  34536790 agttcagcaaacaaattagacgctttaccacaataaccagaaaaaccttgaatctaacc-ccctagtgatttcttaaaatgttgtcgaaacatgcattgt 34536692  T
Q  316 ctgggctatcgaaagaggaaccatccacattaactttcatat-accatctttggggggataccaacgaacctgacgatgaataggatgtttgtctgcgtg 414  Q
    || || || | ||||||||| |||  || |||||||| |||| | |||||| |||||||||| |||||||||| ||||||||||||||||||||||||||    
T  34536691 ctaggttaccaaaagaggaatcat--acgttaacttttatataatcatcttcggggggatactaacgaacctggcgatgaataggatgtttgtctgcgtg 34536594  T
Q  415 accaagaacttgaatcatggaagagtgataagagaaaatactattagctgaagcccaagtatctttcttaacctgctgaaaattctcttcggtttctatt 514  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| || |||| ||||||| |||||||||    
T  34536593 accaaaaacttgaatcatggaagagtgacaagagaaaatactattaactgaagcccaagtatctttcttaacctactaaaaaatctcttc-gtttctatt 34536495  T
Q  515 tctccagatctttccaacaagtgactatgaaaagaggtcatatgttaaacatatcatgatgttt 578  Q
    |||||| ||| |  ||||||||||||||||||||||||||| |||||| |||| ||||||||||    
T  34536494 tctccatatc-tcgcaacaagtgactatgaaaagaggtcatgtgttaagcatagcatgatgttt 34536432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 35507731 - 35507788
Alignment:
Q  21 tcaaggtgtgggaaaaagaaaccaaccaaggaagagcatagagctttctaatgagcga 78  Q
    |||| |||||||||||||||||||||||| ||||| ||||||| ||| |||| |||||    
T  35507731 tcaaagtgtgggaaaaagaaaccaaccaaagaagaacatagagttttttaataagcga 35507788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 448
Target Start/End: Complemental strand, 34196690 - 34196258
Alignment:
Q  18 ccctcaaggtgtgggaaaaagaaaccaaccaaggaagagcatagagctttctaatgagcgaaagaatagtcgcatgaggatgaaattcattcagatgagc 117  Q
    |||||||||| |||||||| ||||||| ||||||||||||| ||||||||| ||| ||| ||||||||||| || ||||||||||||||||| |||||||    
T  34196690 ccctcaaggtatgggaaaaggaaaccagccaaggaagagcagagagctttcgaataagcaaaagaatagtcacacgaggatgaaattcattctgatgagc 34196591  T
Q  118 ttcagcaagcaaatccaaagccgcttgagaatcagattccaaagtaatatattgataaccaaggtctcaagttagttgaagacctcgcaaaattccc--g 215  Q
     ||| ||| ||||||||||||||| ||||||||| |||||||||||||| || ||||||||||||| || | |||||||||||||||||||||||||  |    
T  34196590 atcaacaatcaaatccaaagccgcctgagaatcatattccaaagtaatagatcgataaccaaggtcccaggctagttgaagacctcgcaaaattcccgag 34196491  T
Q  216 agttcaacaaacaaattagacgctctaccacagaaacctgcaacaccttgaatccaacctccataatgatttcttaaaaggccgccgaaacctgcactac 315  Q
    ||||||||||| |||||||||||||||||||| ||||| | || | ||||||||||||| | ||||| ||||||||| ||| |||| ||||| ||| | |    
T  34196490 agttcaacaaataaattagacgctctaccacaaaaaccagaaaaatcttgaatccaacccctataataatttcttaagaggtcgcctaaaccagcattgc 34196391  T
Q  316 ctgggctatcgaaagaggaaccatccacattaactttcatat-accatctttggggggataccaacgaacctgacgatgaataggatgtttgtctgcgtg 414  Q
    | ||  || |||| |||||  ||| |||||||||||| |||| ||||||||| |||| ||||||||||||||| ||||||||||||||||||||| ||||    
T  34196390 ccggattaccgaaggaggagtcatacacattaacttttatataaccatcttt-ggggaataccaacgaacctggcgatgaataggatgtttgtctccgtg 34196292  T
Q  415 accaagaacttgaatcatggaagagtgataagag 448  Q
    ||||||||||||||||||||||||||||||||||    
T  34196291 accaagaacttgaatcatggaagagtgataagag 34196258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 29 - 160
Target Start/End: Original strand, 18430321 - 18430452
Alignment:
Q  29 tgggaaaaagaaaccaaccaaggaagagcatagagctttctaatgagcgaaagaatagtcgcatgaggatgaaattcattcagatgagcttcagcaagca 128  Q
    ||||||||  ||| ||||||| ||||||   |||||||| ||||||| ||||||||||||  ||||||||| ||||||||| |||||    || ||| ||    
T  18430321 tgggaaaagaaaaacaaccaatgaagagatgagagctttttaatgagtgaaagaatagtcctatgaggatgcaattcattccgatgattaacatcaatca 18430420  T
Q  129 aatccaaagccgcttgagaatcagattccaaa 160  Q
    ||| ||||   |||||||| ||||||||||||    
T  18430421 aattcaaaatagcttgagattcagattccaaa 18430452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 435 - 485
Target Start/End: Original strand, 3426464 - 3426514
Alignment:
Q  435 aagagtgataagagaaaatactattagctgaagcccaagtatctttcttaa 485  Q
    |||| ||||| |||||||||||||||  |||||||||| ||||||||||||    
T  3426464 aagaatgatatgagaaaatactattaattgaagcccaattatctttcttaa 3426514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 178; Significance: 1e-95; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 20 - 225
Target Start/End: Original strand, 52715342 - 52715547
Alignment:
Q  20 ctcaaggtgtgggaaaaagaaaccaaccaaggaagagcatagagctttctaatgagcgaaagaatagtcgcatgaggatgaaattcattcagatgagctt 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  52715342 ctcaaggtgtgggaaaaagaaaccaaccaaggaagagcatagagctttctaatgagtgaaagaatagtcgcatgaagatgaaattcattcagatgagctt 52715441  T
Q  120 cagcaagcaaatccaaagccgcttgagaatcagattccaaagtaatatattgataaccaaggtctcaagttagttgaagacctcgcaaaattcccgagtt 219  Q
    || |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||    
T  52715442 caacaagcaaatctaaagccgcttgagaatcagattccaaaataatatattgataaccaaggtctcaagctagttgaagaccttgcaaaattcccgagtt 52715541  T
Q  220 caacaa 225  Q
    ||||||    
T  52715542 caacaa 52715547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 170; E-Value: 8e-91
Query Start/End: Original strand, 20 - 452
Target Start/End: Complemental strand, 48089327 - 48088895
Alignment:
Q  20 ctcaaggtgtgggaaaaagaaaccaaccaaggaagagcatagagctttctaatgagcgaaagaatagtcgcatgaggatgaaattcattcagatgagctt 119  Q
    ||||||||||||||||| |||||||||||||||| | || ||| |||||||||||| |||||||| ||||||||  ||| |||||||||  |||| || |    
T  48089327 ctcaaggtgtgggaaaaggaaaccaaccaaggaacaacagagaactttctaatgagagaaagaattgtcgcatggagattaaattcattatgatgggcat 48089228  T
Q  120 cagcaagcaaatccaaagccgcttgagaatcagattccaaagtaatatattgataaccaaggtctcaagttagttgaagacctcgcaaaattccc--gag 217  Q
    ||  || ||||||||| ||| ||||||||||| ||| |||||||||| || ||||||||||||| |||| ||||||||||||| |||||||||||  |||    
T  48089227 caaaaatcaaatccaacgccacttgagaatcaaatttcaaagtaatagatcgataaccaaggtcacaagctagttgaagaccttgcaaaattcccgagag 48089128  T
Q  218 ttcaacaaacaaattagacgctctaccacagaaacctgcaacaccttgaatccaacctccataatgatttcttaaaaggccgccgaaacctgcactacct 317  Q
    |||| |||| | |||||| ||| |||||||  |||| | || ||||||||||||||| ||||||||||||||||||||||| ||||||| |||| | | |    
T  48089127 ttcagcaaatagattagaagctttaccacatgaaccagaaaaaccttgaatccaacccccataatgatttcttaaaaggccaccgaaacttgcattgcat 48089028  T
Q  318 gggctatcgaaagaggaaccatccacattaactttcatat-accatctttggggggataccaacgaacctgacgatgaataggatgtttgtctgcgtgac 416  Q
    ||| || ||||||||||| ||||||| |||||||| |||| ||||||  || |||||||||||| ||||| || || |||| ||||||||| | ||||||    
T  48089027 gggttaccgaaagaggaatcatccacgttaacttttatataaccatc--tgtggggataccaacaaacctaacaataaata-gatgtttgtttacgtgac 48088931  T
Q  417 caagaacttgaatcatggaagagtgataagagaaaa 452  Q
    ||||||| ||| ||||||||||||||||||| ||||    
T  48088930 caagaacatgactcatggaagagtgataagaaaaaa 48088895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 38 - 505
Target Start/End: Original strand, 31836802 - 31837270
Alignment:
Q  38 gaaaccaaccaaggaagagcatagagctttctaatgagcgaaagaatagtcgcatgaggatgaaattcattcagatgagcttcagcaagcaaatccaaag 137  Q
    |||| |||| ||||||||||||| | |||| |||| |||||||||||||||||||||  |||||||||||||  |||  | ||  |||   ||| |||||    
T  31836802 gaaatcaacaaaggaagagcataaaactttataataagcgaaagaatagtcgcatgaatatgaaattcattctcatggtcatcgtcaatagaattcaaag 31836901  T
Q  138 ccgcttgagaatcagattccaaagtaatatattgataaccaaggtctcaagttagttgaagacctcgcaaaattcccgag--ttcaacaaacaaattaga 235  Q
    | |||||||||||||||| |||||||||| || ||| ||||||||| |||| || ||||||||||| |||||||| ||||  |||| | |||||||||||    
T  31836902 ctgcttgagaatcagattacaaagtaatagatcgattaccaaggtcccaagctacttgaagacctcacaaaattctcgagagttcagcgaacaaattaga 31837001  T
Q  236 cgctctaccacagaaacctgcaacaccttgaatccaacctccataatgatttcttaaaaggccgccgaaacctgcactacctgggctatcgaaagaggaa 335  Q
    ||||||||||| |||||| | || |||||||||||||||  |||||||||||||||||||| ||  ||||| |||| | |||| | || |||| || |||    
T  31837002 cgctctaccactgaaaccagaaaaaccttgaatccaaccctcataatgatttcttaaaaggtcgttgaaacttgcattgcctgagttaccgaatgaagaa 31837101  T
Q  336 ccatccacattaactttcatat-accatctttggggggataccaacgaacctgacgatgaataggatgtttgtctgcgtgaccaagaacttgaatcatgg 434  Q
    |||||||  |||||||| | || || || |   |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||   || |    
T  31837102 ccatccatgttaacttttacataactatatgcagggggataccaacgaacctggcgatgaataggatgtttgtctccgtgaccaagaacatga---atag 31837198  T
Q  435 aagagtgat-aagagaaaatactattagctgaagcccaagtatctttcttaacctgctgaaaattctcttcg 505  Q
    ||||||||| || | ||||||||| || | ||||  ||||||||||||||||||| || |||| ||||||||    
T  31837199 aagagtgataaaaaaaaaatactagtaacagaagttcaagtatctttcttaacctactaaaaaatctcttcg 31837270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 20 - 311
Target Start/End: Complemental strand, 6076490 - 6076193
Alignment:
Q  20 ctcaaggtgtgggaaaaagaaaccaaccaaggaagagcatagagctttctaatgagcgaaagaatagtcgcatgaggatgaaattcattcagatgagctt 119  Q
    ||||||||||||||||| ||||||||| ||  |||||   |||||||||||||||| |||||||||||| |||||| ||||||||||||   |||  | |    
T  6076490 ctcaaggtgtgggaaaaggaaaccaactaaaaaagagtggagagctttctaatgagtgaaagaatagtcacatgagaatgaaattcatttcaatggtcat 6076391  T
Q  120 cagcaagcaaatccaaagccgcttgagaatcagattccaaagtaatatattgataacc---aaggtctcaagttagttgaagacctcgcaaaattc--cc 214  Q
     | ||| |||||| |||||||||||| ||| |||||||||| ||||| || |||||||    |||||| ||| |||||||||||||||||||||||        
T  6076390 taacaatcaaatctaaagccgcttgaaaattagattccaaaataatagatcgataacctaacaggtctaaagctagttgaagacctcgcaaaattctgga 6076291  T
Q  215 gagttcaacaaacaaattagacgctctaccacagaaacctgcaacaccttgaatcc-aacctccataatgatttcttaaaaggccgccgaaacctgca 311  Q
    ||||||||||||||||| |||| |||||||| |  || | | || | ||| ||||| ||||  | ||||||||| |||||| ||||||||||||||||    
T  6076290 gagttcaacaaacaaatcagacactctaccaaatgaatcagaaaaatcttaaatccaaaccatcgtaatgattttttaaaaagccgccgaaacctgca 6076193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 674 - 757
Target Start/End: Original strand, 52715542 - 52715625
Alignment:
Q  674 caacaatactccggtgaagtttgttctaaactaacacataataaaatgacagatcatactagttaattaatcaattatgatgat 757  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  52715542 caacaatactccggtgaagtttgttctaaactaacacataataaaacgacagatcatactagttaattaatcaattatgatgat 52715625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 18 - 352
Target Start/End: Original strand, 55883152 - 55883490
Alignment:
Q  18 ccctcaaggtgtgggaaaaagaaaccaaccaaggaagagcatagagctttctaatgagcgaaagaatagtcgcatgaggatgaaattcattcagatgagc 117  Q
    ||||||| ||||||||||| ||||||| ||||  |||||   |||||||| |||||||  |||||||||  |||||| |||||||||||||| ||||| |    
T  55883152 ccctcaatgtgtgggaaaaggaaaccatccaataaagagaggagagctttttaatgagtaaaagaatagctgcatgatgatgaaattcattctgatgatc 55883251  T
Q  118 ttcagcaagcaaatccaaagccgcttgagaatcagattccaaagtaatatattgataaccaaggtctcaagttagttgaagacctcgcaaaat--tcccg 215  Q
       ||||| ||| ||||||||||||| ||||||||||| |||| ||||| || ||||| |||| || ||||||| ||| ||  ||| |||| |  ||  |    
T  55883252 aatagcaatcaagtccaaagccgctttagaatcagatttcaaa-taatagatcgataatcaagatcccaagttaattggaggtctcacaaatttgtcgag 55883350  T
Q  216 agttcaacaaacaaattagacgctctaccacagaaacctgcaacaccttgaatcca---acctccataatgatttcttaaaaggccgccgaaacctgcac 312  Q
    |||||||||||| |||| ||||||||||  ||  | || | || ||||||||||||    ||||||| ||||||| ||| ||| ||||| ||||| |||     
T  55883351 agttcaacaaaccaatttgacgctctactgcatgagccagaaaaaccttgaatccagcctcctccatgatgatttattataagaccgccaaaacccgcat 55883450  T
Q  313 tacctgggctatcgaaagaggaaccatccacattaacttt 352  Q
    | ||| || |||||||||||||||||||||||||||||||    
T  55883451 tccctaggttatcgaaagaggaaccatccacattaacttt 55883490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 528 - 578
Target Start/End: Original strand, 55883584 - 55883634
Alignment:
Q  528 ccaacaagtgactatgaaaagaggtcatatgttaaacatatcatgatgttt 578  Q
    ||||||||| |||| ||||||||||||| |||||| |||| ||||||||||    
T  55883584 ccaacaagtaactacgaaaagaggtcatgtgttaagcataacatgatgttt 55883634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 154; Significance: 3e-81; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 41 - 311
Target Start/End: Complemental strand, 28629552 - 28629281
Alignment:
Q  41 accaaccaaggaagagcatagagctttctaatgagcgaaagaatagtcgcatgaggatgaaattcattcagatgagcttcagcaagcaaatccaaagccg 140  Q
    |||||||||||||||||| |||| || ||||| ||||||| |||||||||||||||| ||||||||||| |||| || ||||||| |||||||||||| |    
T  28629552 accaaccaaggaagagcagagagtttactaataagcgaaaaaatagtcgcatgaggacgaaattcattctgatgggcatcagcaatcaaatccaaagctg 28629453  T
Q  141 cttgagaatcagattccaaagtaatatattgataaccaaggtctcaagttagttgaagacctcgcaaaattccc--gagttcaacaaacaaattagacgc 238  Q
    ||||||||||| |||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||||  |||||||  |||||||||||||||    
T  28629452 cttgagaatcaaattccaaagtaatagatcgataaccaaggtcccaagttagttgaagacctcgcaaaattcccgagagttcagtaaacaaattagacgc 28629353  T
Q  239 tctaccacagaaacctgcaacaccttgaatccaacctccataatgatttcttaaaaggccgccgaaacctgca 311  Q
    | ||||| || ||||   || ||||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  28629352 tttaccataggaaccaaaaaaaccttgaatccaacc-ccataatgatttcttaaaaggccgccgaagcctgca 28629281  T

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Target: chr6; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 29 - 247
Target Start/End: Complemental strand, 24796362 - 24796141
Alignment:
Q  29 tgggaaaaagaaaccaaccaaggaagagcatagagctttctaatgagcgaaagaatagtcgcatgaggatgaaattcattcaga---tgagct--tcagc 123  Q
    ||||||||  ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  ||   | | ||  || |     
T  24796362 tgggaaaagaaaaccaaccaaggaagagcatagagatttctaatgagcgaaagaatagtcgcatgaggatgaaattcattatgattgtcatctcatcggt 24796263  T
Q  124 aagcaaatccaaagccgcttgagaatcagattccaaagtaatatattgataaccaaggtctcaagttagttgaagacctcgcaaaattcccg--agttca 221  Q
    || |||||  |||| | |||||||| |||||||||||||||||    ||| | ||||||| |||  |||||||||||||||||||||| | |  ||||||    
T  24796262 aatcaaatttaaagtcacttgagaaacagattccaaagtaata----gatcagcaaggtcccaaactagttgaagacctcgcaaaatttctgaaagttca 24796167  T
Q  222 acaaacaaattagacgctctaccaca 247  Q
    || |||||||||||||||||||||||    
T  24796166 actaacaaattagacgctctaccaca 24796141  T

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Target: chr7 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 260 - 336
Target Start/End: Complemental strand, 5031028 - 5030952
Alignment:
Q  260 accttgaatccaacctccataatgatttcttaaaaggccgccgaaacctgcactacctgggctatcgaaagaggaac 336  Q
    |||||||||||||||||||||||||||||||||||||||| ||| ||||||| |  || || || ||||||||||||    
T  5031028 accttgaatccaacctccataatgatttcttaaaaggccgtcgagacctgcattgtctaggttaccgaaagaggaac 5030952  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 77 - 151
Target Start/End: Complemental strand, 5031552 - 5031478
Alignment:
Q  77 gaaagaatagtcgcatgaggatgaaattcattcagatgagcttcagcaagcaaatccaaagccgcttgagaatca 151  Q
    ||||||||||||| |||||||||||| | |||  ||||| | ||| ||| ||| | |||||||||||||||||||    
T  5031552 gaaagaatagtcgaatgaggatgaaaataattgtgatgatcatcaacaatcaatttcaaagccgcttgagaatca 5031478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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