View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18617_high_5 (Length: 552)
Name: NF18617_high_5
Description: NF18617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18617_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 486; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 20 - 537
Target Start/End: Complemental strand, 9488999 - 9488482
Alignment:
| Q |
20 |
aggtgaaagaaacacattgtagaaaaaatgaatgctcctagatcaaatgttctattttttggcttcttcgaactcgcggttctgaagctggtcattgagt |
119 |
Q |
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| T |
9488999 |
aggtgaaagaaacacattgtagaaaaaatgaatgctcctagatcaaatgttctattttttggcttcttcgaactcgcggttctgaagctggtcattgggt |
9488900 |
T |
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| Q |
120 |
tggtttacccaagcttttgtctccttagatttctctgctgcacattttctctggcgccatggcagtagcggtggatattgggacatgcacgtgacccaaa |
219 |
Q |
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| T |
9488899 |
tggtttacccaagcttttgtctccttagatttctctgctacacattttctctggcgccatggcagtagcggtggatattcggacatgcacgtgacccaaa |
9488800 |
T |
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| Q |
220 |
tctgcacggtggtcagaatcttttctgcacttggcttggcctatacgactcaaaccaggtttgtgctttcttttgtttctgctatcatctaagtaacgtc |
319 |
Q |
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| T |
9488799 |
tctgcacggtggtcagaatcttttctgcacttggcttggcctatacgactcaaaccaggtttgtgctttcttttgtttctgctatcatctaagtaacgtc |
9488700 |
T |
|
| Q |
320 |
aggtttcaccatctatgttaattgcttcattgtcaccgatctttctttcccttccgtatccaaacttgagcatgacaattttgatgacaatggtggattg |
419 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||| |
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| T |
9488699 |
aggtttcaccatcgatgttaattgcttcattgtcaccgatctttctttcccttccgtatccaaacttgagcatgacaattttgatgacgatagtgggttg |
9488600 |
T |
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| Q |
420 |
tccggtgctcgtgattatctgtttatattttggcctgcagcattttaatgtctcttttttctcttcgtctttccctttctgttcgcgcatttgcaggatt |
519 |
Q |
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| T |
9488599 |
tccggtgctcgtgattatctgtttatattttggcctgcagcattttaatgtctcttttttctcttcgtctttccctttctgttcgcgcatttgcaggatt |
9488500 |
T |
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| Q |
520 |
catccacaactgttcgat |
537 |
Q |
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| T |
9488499 |
cttccacaactgttcgat |
9488482 |
T |
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