View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18617_low_1 (Length: 1097)
Name: NF18617_low_1
Description: NF18617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18617_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 416; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 569 - 1082
Target Start/End: Original strand, 38718996 - 38719503
Alignment:
| Q |
569 |
ttgtgataagctagtttaaggaataagaaatattctttacatacaagttcagaggttttgagtatctgcaaacaatttcctttaattaattaatgtcaac |
668 |
Q |
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| T |
38718996 |
ttgtgataagctagtttaaggaataagaaatattctttacatacaagttcagaggttttcagtatctgcaaacaatttcctttaa----ttaatgtcaac |
38719091 |
T |
|
| Q |
669 |
taggaaggaagtttgacctgagacatagccagaaagccagatacaggaaccgttttggttctggaaacccaaatactgttaaagccttcttagttctgac |
768 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38719092 |
taggaaggaagtttgaccagagacatagccagaaagccagatacaggaaccgttttggttctggaaacccaaatactgttaaagccttcttagttctgac |
38719191 |
T |
|
| Q |
769 |
tatttgacattaattactattattttagtaaacttagttgaatatacgtgtaattagtcaaagggtcaacacaaaatagcaaggtcaaaatnnnnnnnga |
868 |
Q |
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| T |
38719192 |
tatttgacattagttactattattttagtaaacttagttgaatatacgtgtaattagtcaaagggtcaacacgaaatagcaaggtcaaaataaaaaaaga |
38719291 |
T |
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| Q |
869 |
gtaactagcaataactaaaatactactccaatatagtaatttaatcaatcaagtaggtatattatttaacaattctgcgtaccaagtattcagctatcta |
968 |
Q |
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| T |
38719292 |
gtaactagcaataactaaaatact------atatagtaatttaatcaatcaagtaggagtattatttaacaattctgcgtaccaagtattcagctatcta |
38719385 |
T |
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| Q |
969 |
tactcgcagcccttcactttatcttttagttttgacaaattctcagttttaaagtgcaattcctcctaaatccaacgtcaacgctgaactctc----tct |
1064 |
Q |
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| T |
38719386 |
tactcgcagcccttcactttatcttttagttttgacaaattctcagttttaaagtgcaattcctcctaaatccaacgtcaacgctgaactctctctatct |
38719485 |
T |
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| Q |
1065 |
atataatcacatactctt |
1082 |
Q |
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| T |
38719486 |
atataatcacatactctt |
38719503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 237; E-Value: 1e-130
Query Start/End: Original strand, 9 - 420
Target Start/End: Original strand, 38718411 - 38718840
Alignment:
| Q |
9 |
catcatcatgaagcttacagttttannnnnnnaagatcaagcttacagttgatccaaccaaatacgtgtattcccctttttcttcttgttttattttaac |
108 |
Q |
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| T |
38718411 |
catcatcatgaagcttacagttttatttttttaagatcaagcttacagttgatccaaccaaatacgtgtattcccctttttcttcttgttttattttaac |
38718510 |
T |
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| Q |
109 |
atatgattctactttacgattaattgatttgaactagtgggcttcttc------------------atcctcaattgaaaaagatgtattgttaattaat |
190 |
Q |
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| T |
38718511 |
atatgattctactttacgattaattgatttgaactagtgggcttcatccttaattgagtgaggtgtatgcataattgaaaaggatgtattgttaattaat |
38718610 |
T |
|
| Q |
191 |
ggaagcatgtaattacagaaaaccaaatcaatatctttatgtcagttacagatgacacgaacatgatgaagagactatggagaaaggggatgaacgagta |
290 |
Q |
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| T |
38718611 |
ggaagcatgtaattacagaaaaccaaatcaatatctttatgtcagttacagatgaaacgacggcgaagaagagacgatggagaaaggggatgaacgagta |
38718710 |
T |
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| Q |
291 |
ggtgaatgggaaggcagatgtgatcaatgtcaatgatggagaagtgggtttctgcattgagacttcnnnnnnnnnnnnnnnnnnnaattaaaacattttt |
390 |
Q |
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| T |
38718711 |
ggtgaatgggaaggcagatgtgatcaatgtcaatgatggagaagtgggtttctgcattgagatttcttttttctttttcttttttaattaaaacatttat |
38718810 |
T |
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| Q |
391 |
aatatttgaataaaaagatcttagccgttt |
420 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
38718811 |
aatatttgaataaaaagatcttagccgttt |
38718840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 516 - 572
Target Start/End: Original strand, 38718921 - 38718977
Alignment:
| Q |
516 |
acattcgtaattattttttgtttacaaacattcttaattactcatcccatctcttgt |
572 |
Q |
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| T |
38718921 |
acattcgtaattattttttgtttacaaacattcttaattactcattccatctcttgt |
38718977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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