View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18617_low_15 (Length: 313)
Name: NF18617_low_15
Description: NF18617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18617_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 23 - 295
Target Start/End: Complemental strand, 30003419 - 30003147
Alignment:
| Q |
23 |
tgaaactacaacccaaaaatcttcacgtgcttacaattaagaaacatgctttttatgcaaccaattatcaaaatcaatcttcatgagttgcaatctnnnn |
122 |
Q |
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| T |
30003419 |
tgaaactacaacccaaaaatcttcacgtgcttacaattaagaaacatgctttttatggaaccaattatcaaaatcaatcttcatgagttgcaatctaaaa |
30003320 |
T |
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| Q |
123 |
nnngttaaaaatcaatcttcataggcttcaatcaaacctgtaagaatcgataattaatatatatgtagtgacccattgaactaaaattaagtagcaaaca |
222 |
Q |
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| T |
30003319 |
aaagttaaaaatcaatcttcataggcttcaatcaaacctgtaagaatcgataattaatatatatgtagtgacccattgaactaaaattaagtagcaaaca |
30003220 |
T |
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| Q |
223 |
ataaatattacagtaatattatagcccatatttggattatcacatcatggaattttttacaaaggggggatat |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
30003219 |
ataaatattacagtaatattatagcccatatttggattatcacatcatggaattttttacgaaggggggatat |
30003147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 23 - 295
Target Start/End: Complemental strand, 37689784 - 37689513
Alignment:
| Q |
23 |
tgaaactacaacccaaaaatcttcacgtgcttacaattaagaaacatgctttttatgcaaccaattatcaaaatcaatcttcatgagttgcaatctnnnn |
122 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
37689784 |
tgaaactacaacccaaaaatcttcaagtgcttacaattaagaaacatgctttttatggaaccaattatcaaaatcaatcttcatgagttgcaatctaaaa |
37689685 |
T |
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| Q |
123 |
nnngttaaaaatcaatcttcataggcttcaatcaaacctgtaagaatcgataattaatatatatgtagtgacccattgaactaaaattaagtagcaaaca |
222 |
Q |
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| T |
37689684 |
aaagttaaaaatcaatcttcatag-cttcaatcaaacatgtaagaatcgataattaatatatatgtagtgacccattgaactaaaattaaatagcaaaca |
37689586 |
T |
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| Q |
223 |
ataaatattacagtaatattatagcccatatttggattatcacatcatggaattttttacaaaggggggatat |
295 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||| |||| |
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| T |
37689585 |
ataaatattacagtaatattgtagcccatatttggattatcacatcatggaatttttgacgaagggggcatat |
37689513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 118
Target Start/End: Complemental strand, 28124023 - 28123942
Alignment:
| Q |
37 |
aaaaatcttcacgtgcttacaattaagaaacatgctttttatgcaaccaatt-atcaaaatcaatcttcatgagttgcaatct |
118 |
Q |
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|||| |||||||||| || ||||||||||||| |||||||||| | |||||| || |||| |||||||||||||||| ||||| |
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| T |
28124023 |
aaaattcttcacgtg-ttgcaattaagaaacaagctttttatggacccaattaataaaaagcaatcttcatgagttggaatct |
28123942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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