View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18617_low_16 (Length: 289)
Name: NF18617_low_16
Description: NF18617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18617_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 16 - 272
Target Start/End: Original strand, 12288293 - 12288549
Alignment:
| Q |
16 |
atcgaataagagattggtgacgcagttaacaacaacgtgaacttgaaaatgaaaaattaacatattctacatttgtatttactaccgataaagtgcttga |
115 |
Q |
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| T |
12288293 |
atcgaataagagattgctgacgcagttagcaacaacgtgaacttgaaaatgaaaaattaacatattctacatttgtatttaccaccgataaagtgcttga |
12288392 |
T |
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| Q |
116 |
tacatatggtgaatagtttggaaagaaaatagttttgttgtgatttataggcttgaaatagccacataaaaataaggaacaatgacaaagctaattcgta |
215 |
Q |
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| T |
12288393 |
tacatatgatgaatagtttggaaaggaaatggttttgttgtgatttataggcttgaaatagccacataaaaataaggaacaatgacaaagctaattctta |
12288492 |
T |
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| Q |
216 |
gtttttgaaagaagtggaaagtatatgccttggaaaatataattgagaggaatacct |
272 |
Q |
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| T |
12288493 |
gtttttgaaacaagtggaaagtatatgccttggaaaatataattgagaggaatacct |
12288549 |
T |
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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 250
Target Start/End: Original strand, 7150427 - 7150526
Alignment:
| Q |
150 |
ttgttgtgatttataggcttgaaatagccacataaaaataaggaacaatgacaaagctaattcgtagtttttgaaagaagtggaaagtatatgccttgga |
249 |
Q |
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| T |
7150427 |
ttgttgtgatctataggtctgaagtagccacagcaaaaccaggaacaagaacaaagctaattc-ttggttgtgaaagaagcggaaagtataggccttgga |
7150525 |
T |
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