View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18617_low_18 (Length: 257)
Name: NF18617_low_18
Description: NF18617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18617_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 140; Significance: 2e-73; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 23 - 186
Target Start/End: Complemental strand, 11398210 - 11398047
Alignment:
| Q |
23 |
ttttctttctattgttattttacttgcaaattggttgttattcctccttagtttatacactgagagttgaattatttgttcaaattaatacaatagcaac |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |
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| T |
11398210 |
ttttctttctattgttattttacttgcaaattggttgttattcctccttagtttatacactgggagttgaattgattgttcaaattaatacaatagcaac |
11398111 |
T |
|
| Q |
123 |
aattatctctattacaatttgatgcattacacactcatggtataataacatgcaacccaaccaa |
186 |
Q |
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|||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11398110 |
aattatctttgttacaatttaatgcattacacactcatggtataataacatgcaacccaaccaa |
11398047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 187 - 242
Target Start/End: Complemental strand, 11396708 - 11396653
Alignment:
| Q |
187 |
tattaaataaggatttgatgtcatcttaaaattagaatttaacctaactcaatatg |
242 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |
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| T |
11396708 |
tattaaataaggatttgatgtcatcttagaattagaatttaacccaactcaatatg |
11396653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 37 - 153
Target Start/End: Original strand, 18136560 - 18136676
Alignment:
| Q |
37 |
ttattttacttgcaaattggttgttattcctccttagtttatacactgagagttgaattatttgttcaaatt-aatacaatagcaacaattatctctatt |
135 |
Q |
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||||||||||||| |||||||||| |||||||||||||||| |||||| ||||| ||| ||||||| ||| ||| |||||||||||||| ||| ||| |
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| T |
18136560 |
ttattttacttgctaattggttgt-attcctccttagtttacacactgggagtttgattcattgttcacattaaatgcaatagcaacaattgtcttcatt |
18136658 |
T |
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| Q |
136 |
acaatttgatgcattaca |
153 |
Q |
| |
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| T |
18136659 |
ataatttgatccattaca |
18136676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 166 - 195
Target Start/End: Complemental strand, 11397878 - 11397849
Alignment:
| Q |
166 |
aataacatgcaacccaaccaatattaaata |
195 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
11397878 |
aataacatgcaacccaaccaatattaaata |
11397849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 97; Significance: 9e-48; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 23 - 151
Target Start/End: Original strand, 47762218 - 47762346
Alignment:
| Q |
23 |
ttttctttctattgttattttacttgcaaattggttgttattcctccttagtttatacactgagagttgaattatttgttcaaattaatacaatagcaac |
122 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| || |||||||||| ||||||||||||||||||||||||| |
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| T |
47762218 |
ttttctttctattgttattttacttgcaaaatggttgttatttctccttagtttatacattgggagttgaattgattgttcaaattaatacaatagcaac |
47762317 |
T |
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| Q |
123 |
aattatctctattacaatttgatgcatta |
151 |
Q |
| |
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|||||||||| |||||||||||| ||||| |
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| T |
47762318 |
aattatctcttttacaatttgatccatta |
47762346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 25 - 91
Target Start/End: Complemental strand, 20290605 - 20290540
Alignment:
| Q |
25 |
ttctttctattgttattttacttgcaaattggttgttattcctccttagtttatacactgagagttg |
91 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
20290605 |
ttctttctattgttattt-acttgcaaattggttgttattcctccttagtttatacactgggagttg |
20290540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 25 - 153
Target Start/End: Complemental strand, 17225188 - 17225059
Alignment:
| Q |
25 |
ttctttctattgttattttacttgcaaattggttgttattcctccttagtttatacactgagagttgaattatttgttcaaatt-aatacaatagcaaca |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||| ||||||||||||||| |
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| T |
17225188 |
ttctttctattgttattttacttgcaaattggttgttattcctccttagtttatacactgggagttgaattgattgttcatattcaatacaatagcaaca |
17225089 |
T |
|
| Q |
124 |
attatctctattacaatttgatgcattaca |
153 |
Q |
| |
|
|||||||| |||||||||||| ||||||| |
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| T |
17225088 |
attatctcggttacaatttgatccattaca |
17225059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 25 - 153
Target Start/End: Original strand, 7051256 - 7051385
Alignment:
| Q |
25 |
ttctttctattgttattttacttgcaaattggttgttattcctccttagtttatacactgagagttgaattatttgttcaaatt-aatacaatagcaaca |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| || |||||||||| ||||||| ||| ||| ||||||||||| |
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| T |
7051256 |
ttctttctattgttattttacttgcaaattggttgttattcgtcctttgtttatactgtgggagttgaattgattgttcatattcaatgcaatagcaaca |
7051355 |
T |
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| Q |
124 |
attatctctattacaatttgatgcattaca |
153 |
Q |
| |
|
||||||||| |||||||||||| ||||||| |
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| T |
7051356 |
attatctctgttacaatttgatccattaca |
7051385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 25 - 155
Target Start/End: Original strand, 52099103 - 52099232
Alignment:
| Q |
25 |
ttctttctattgttattttacttgcaaattggttgttattcctccttagtttatacactgagagttgaattatttgttcaaattaatacaatagcaacaa |
124 |
Q |
| |
|
||||||| || |||||||||||||| |||||||||| |||||||||||||||||||||| |||||| ||| |||||||||| |||||||||||||||| |
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| T |
52099103 |
ttctttcaatagttattttacttgctaattggttgt-attcctccttagtttatacactaggagttggattcattgttcaaatcaatacaatagcaacaa |
52099201 |
T |
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| Q |
125 |
ttatctctattacaatttgatgcattacaca |
155 |
Q |
| |
|
|| ||| |||| |||||||| ||||||||| |
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|
| T |
52099202 |
ttgtcttcattataatttgatccattacaca |
52099232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 25 - 153
Target Start/End: Original strand, 42735429 - 42735558
Alignment:
| Q |
25 |
ttctttctattgttattttacttgcaaattggttgttattcctccttagtttatacactgagagttgaattatttgttcaaatt-aatacaatagcaaca |
123 |
Q |
| |
|
||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||||||| | ||||| ||| |||||||||| |||| |
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| T |
42735429 |
ttctttctattgttagtttacttgcaaattggctgttattcctccttagtttatacactgggagttgaattgatagttcatattcaatacaatagaaaca |
42735528 |
T |
|
| Q |
124 |
attatctctattacaatttgatgcattaca |
153 |
Q |
| |
|
||||||||| ||||| |||||| ||||||| |
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|
| T |
42735529 |
attatctctgttacactttgatccattaca |
42735558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 40 - 156
Target Start/End: Original strand, 6142032 - 6142149
Alignment:
| Q |
40 |
ttttacttgcaaattggttgttattcctccttagtttatacactgagagttgaattatttgttcaaatt-aatacaatagcaacaattatctctattaca |
138 |
Q |
| |
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||||||| | |||||||| | ||||||||||| |||||||||||| |||||| ||| | ||||| ||| | | |||||||||||||| ||| ||||| | |
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| T |
6142032 |
ttttactagtaaattggtagatattcctcctttgtttatacactgggagttggattcatcgttcatattcagtgcaatagcaacaattgtctttattata |
6142131 |
T |
|
| Q |
139 |
atttgatgcattacacac |
156 |
Q |
| |
|
||||||| |||||||||| |
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|
| T |
6142132 |
atttgatccattacacac |
6142149 |
T |
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