View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18617_low_19 (Length: 251)

Name: NF18617_low_19
Description: NF18617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18617_low_19
NF18617_low_19
[»] chr3 (19 HSPs)
chr3 (16-233)||(18029633-18029850)
chr3 (80-136)||(27972780-27972836)
chr3 (69-136)||(28000017-28000084)
chr3 (69-119)||(27396376-27396426)
chr3 (80-136)||(27463132-27463188)
chr3 (88-136)||(28471278-28471326)
chr3 (88-136)||(28512324-28512372)
chr3 (69-136)||(11409947-11410014)
chr3 (69-136)||(27910980-27911047)
chr3 (81-136)||(28179020-28179075)
chr3 (151-200)||(27396446-27396495)
chr3 (97-136)||(28491328-28491367)
chr3 (88-136)||(26211394-26211442)
chr3 (64-136)||(28080866-28080938)
chr3 (107-136)||(17747683-17747712)
chr3 (110-139)||(18714304-18714333)
chr3 (107-136)||(19049003-19049032)
chr3 (80-136)||(26134182-26134238)
chr3 (81-139)||(27372445-27372500)
[»] scaffold0043 (1 HSPs)
scaffold0043 (81-139)||(70982-71037)


Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 16 - 233
Target Start/End: Original strand, 18029633 - 18029850
Alignment:
Q  16 attcctgaagcaacagataagataaatactgattttatccgtggaaggttcaccagtgttatcactttaattttgcacatgatatgtgatagtcttgaaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18029633 attcctgaagcaacagataagataaatactgattttatccgtggaaggttcaccagtgttatcactttaattttgcacatgatatgtgatagtcttgaaa 18029732  T
Q  116 gacattgagcacgttcccataagtgatcctaaaatgtaatccgaataaaacgaaacttaaatcaaaccaaataatcccttattgtgcnnnnnnnttaagt 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||    
T  18029733 gacattgagcacgttcccataagtgatcctaaaatgtaatccgaataaaacgaaacttaaatcaaaccaaataatcccttattgtgcaaaaaaattaagt 18029832  T
Q  216 gaatgcaatgcaaacatt 233  Q
    ||||||||||||||||||    
T  18029833 gaatgcaatgcaaacatt 18029850  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 80 - 136
Target Start/End: Complemental strand, 27972836 - 27972780
Alignment:
Q  80 ctttaattttgcacatgatatgtgatagtcttgaaagacattgagcacgttcccata 136  Q
    ||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  27972836 ctttaatattgcacaagatatgtgattgtcttgaaagacattgagcacgttcccata 27972780  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 69 - 136
Target Start/End: Complemental strand, 28000084 - 28000017
Alignment:
Q  69 cagtgttatcactttaattttgcacatgatatgtgatagtcttgaaagacattgagcacgttcccata 136  Q
    |||||| ||| ||||||| ||||||| |||||||||| || |||||||||||||||||||||||||||    
T  28000084 cagtgtaatctctttaatattgcacaagatatgtgatggtattgaaagacattgagcacgttcccata 28000017  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 69 - 119
Target Start/End: Original strand, 27396376 - 27396426
Alignment:
Q  69 cagtgttatcactttaattttgcacatgatatgtgatagtcttgaaagaca 119  Q
    ||||| |||||||||||| ||||||||||||||||||||||||||||||||    
T  27396376 cagtgatatcactttaatattgcacatgatatgtgatagtcttgaaagaca 27396426  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 80 - 136
Target Start/End: Original strand, 27463132 - 27463188
Alignment:
Q  80 ctttaattttgcacatgatatgtgatagtcttgaaagacattgagcacgttcccata 136  Q
    ||||||| ||| ||| |||||||||| ||||||||||||||||||||||||||||||    
T  27463132 ctttaatattgtacaggatatgtgattgtcttgaaagacattgagcacgttcccata 27463188  T

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Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 88 - 136
Target Start/End: Original strand, 28471278 - 28471326
Alignment:
Q  88 ttgcacatgatatgtgatagtcttgaaagacattgagcacgttcccata 136  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  28471278 ttgcacaagatatgtgattgtcttgaaagacattgagcacgttcccata 28471326  T

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Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 88 - 136
Target Start/End: Original strand, 28512324 - 28512372
Alignment:
Q  88 ttgcacatgatatgtgatagtcttgaaagacattgagcacgttcccata 136  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  28512324 ttgcacaagatatgtgattgtcttgaaagacattgagcacgttcccata 28512372  T

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Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 69 - 136
Target Start/End: Complemental strand, 11410014 - 11409947
Alignment:
Q  69 cagtgttatcactttaattttgcacatgatatgtgatagtcttgaaagacattgagcacgttcccata 136  Q
    |||||| ||| ||||||| ||||||| ||||| |||| ||||| ||||||||||||||||||||||||    
T  11410014 cagtgtaatctctttaatattgcacaagatatctgatggtcttaaaagacattgagcacgttcccata 11409947  T

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Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 69 - 136
Target Start/End: Complemental strand, 27911047 - 27910980
Alignment:
Q  69 cagtgttatcactttaattttgcacatgatatgtgatagtcttgaaagacattgagcacgttcccata 136  Q
    |||||| ||| ||||||| ||||| | |||||||||| ||||||||||||||||| ||||||||||||    
T  27911047 cagtgtaatctctttaatattgcataagatatgtgattgtcttgaaagacattgaacacgttcccata 27910980  T

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Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 81 - 136
Target Start/End: Complemental strand, 28179075 - 28179020
Alignment:
Q  81 tttaattttgcacatgatatgtgatagtcttgaaagacattgagcacgttcccata 136  Q
    |||||| ||||||| |||||||||| ||||||||||||||||||||| ||||||||    
T  28179075 tttaatattgcacaagatatgtgattgtcttgaaagacattgagcactttcccata 28179020  T

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Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 200
Target Start/End: Original strand, 27396446 - 27396495
Alignment:
Q  151 gtaatccgaataaaacgaaacttaaatcaaaccaaataatcccttattgt 200  Q
    ||||||||||||||| | |||||||||||||||||| |||||||||||||    
T  27396446 gtaatccgaataaaaaggaacttaaatcaaaccaaacaatcccttattgt 27396495  T

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Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 136
Target Start/End: Original strand, 28491328 - 28491367
Alignment:
Q  97 atatgtgatagtcttgaaagacattgagcacgttcccata 136  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  28491328 atatgtgattgtcttgaaagacattgagcacgttcccata 28491367  T

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Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 136
Target Start/End: Original strand, 26211394 - 26211442
Alignment:
Q  88 ttgcacatgatatgtgatagtcttgaaagacattgagcacgttcccata 136  Q
    ||||||| |||||||||| |||||  |||||||||||||||||||||||    
T  26211394 ttgcacaggatatgtgattgtcttagaagacattgagcacgttcccata 26211442  T

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Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 136
Target Start/End: Complemental strand, 28080938 - 28080866
Alignment:
Q  64 ttcaccagtgttatcactttaattttgcacatgatatgtgatagtcttgaaagacattgagcacgttcccata 136  Q
    |||| |||||| ||| ||||||| || |||| ||||| |||| || |||||||| ||||||||||||||||||    
T  28080938 ttcatcagtgtaatctctttaatattccacaagatatttgatggtattgaaagaaattgagcacgttcccata 28080866  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 107 - 136
Target Start/End: Original strand, 17747683 - 17747712
Alignment:
Q  107 gtcttgaaagacattgagcacgttcccata 136  Q
    ||||||||||||||||||||||||||||||    
T  17747683 gtcttgaaagacattgagcacgttcccata 17747712  T

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Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 139
Target Start/End: Original strand, 18714304 - 18714333
Alignment:
Q  110 ttgaaagacattgagcacgttcccataagt 139  Q
    ||||||||||||||||||||||||||||||    
T  18714304 ttgaaagacattgagcacgttcccataagt 18714333  T

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Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 107 - 136
Target Start/End: Original strand, 19049003 - 19049032
Alignment:
Q  107 gtcttgaaagacattgagcacgttcccata 136  Q
    ||||||||||||||||||||||||||||||    
T  19049003 gtcttgaaagacattgagcacgttcccata 19049032  T

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Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 136
Target Start/End: Original strand, 26134182 - 26134238
Alignment:
Q  80 ctttaattttgcacatgatatgtgatagtcttgaaagacattgagcacgttcccata 136  Q
    ||||||| |||||||||||||||||  ||||| ||| ||||| || |||||||||||    
T  26134182 ctttaatattgcacatgatatgtgactgtcttaaaacacattcaggacgttcccata 26134238  T

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Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 139
Target Start/End: Complemental strand, 27372500 - 27372445
Alignment:
Q  81 tttaattttgcacatgatatgtgatagtcttgaaagacattgagcacgttcccataagt 139  Q
    |||||| ||||||||||||||||||    ||||||||||||||||| ||| ||||||||    
T  27372500 tttaatattgcacatgatatgtgatt---ttgaaagacattgagcaagtttccataagt 27372445  T

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Target: scaffold0043 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 81 - 139
Target Start/End: Original strand, 70982 - 71037
Alignment:
Q  81 tttaattttgcacatgatatgtgatagtcttgaaagacattgagcacgttcccataagt 139  Q
    |||||| ||||||||||||||||||    ||||||||||||||||||||||||||||||    
T  70982 tttaatattgcacatgatatgtgatt---ttgaaagacattgagcacgttcccataagt 71037  T

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