View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18617_low_4 (Length: 635)
Name: NF18617_low_4
Description: NF18617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18617_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 487; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 19 - 629
Target Start/End: Original strand, 39969866 - 39970473
Alignment:
| Q |
19 |
ggactgtcctgttttagccaatatttttgcatgaggtatggtctattggaccaagtcaaagtttaaagctcaaatagtgatcatcgagttttgattcgct |
118 |
Q |
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| T |
39969866 |
ggactgtcccgttttagccaatatttttgcatgaggtatggtctattggacgaagtcaaagtttaaagctcaaatagtgatcattgagttttgattcgct |
39969965 |
T |
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| Q |
119 |
gcaat----cagggggtttgcattcaggcatttgagacgacaatggcggtccgatcaaatgtgtgaatatgaaatctcatgactacgtcgatccaattat |
214 |
Q |
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| T |
39969966 |
gcaatcaatcagggggtttgcattcaggcatttgagacaacaatggcggtccgatcaaatgtgtgaatatgaaatctcatgactacgtcgatccaattat |
39970065 |
T |
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| Q |
215 |
agggaacctgaatttatcatcttaccatgctccaaaatgtaaacac-nnnnnnnnntactcatgatttttgtgcaatgtggtttttagctaggaaacaat |
313 |
Q |
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| T |
39970066 |
agggaacctgaatttatcatcttaccatgctccaaaatgtaaacacaaaaaacaaatactcatgagttttgtgcaatgtggtttttagctaggaaacaat |
39970165 |
T |
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| Q |
314 |
tatgcttagaaacaatgaggtcgaataatatgagcctcacaaattctcaacacaacccggcgtgacacaaatttcctaactgtaacaatgtaggcatgca |
413 |
Q |
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| T |
39970166 |
tatgcttagaaacaatgaggtcgaataatatgagcctcacaaattctcaacacaacccggcgtgacacaaatttcctaactgtaacaaggtaggc----- |
39970260 |
T |
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| Q |
414 |
atattttgaaccttcaaatcaaacccctaaagtctagctggaactacctaccccatttaacaaaaacacaccttcgttcagtttactcaaaagtagacat |
513 |
Q |
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| T |
39970261 |
---ttttgaaccttcaaatcaaacccctaaagtctggctggaactacctaccccatttaacaaaaacacaccttcgttcagtttactcaatagtagacat |
39970357 |
T |
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| Q |
514 |
ctcagcaaattttgagagttctgccgtcggttagtagtgagtaaactttctttattggagaatatcttgaacacacaacacaagatgaattctttttctt |
613 |
Q |
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| T |
39970358 |
ctcagcaaattttgagagttctgtcgtcggttagtagtgagtaaactttctttattggagaatttcttgaacacacaacacaagatgaattcttttcctt |
39970457 |
T |
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| Q |
614 |
gaaccaaatattcttc |
629 |
Q |
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| T |
39970458 |
gaaccaaattttcttc |
39970473 |
T |
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