View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18617_low_6 (Length: 467)
Name: NF18617_low_6
Description: NF18617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18617_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 15 - 452
Target Start/End: Original strand, 39318680 - 39319112
Alignment:
| Q |
15 |
acttttcgcaccgtttaagatcatttcacatgtatatactcaaaaaattatataatttttgtgctgttcattggtactacacttttgttttagactggtc |
114 |
Q |
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| T |
39318680 |
acttttcgcaccgtttaagatcatttcacatgtatatactcaaaaaattatataatttttgtgctgttcattggtactacacttttgttttagactggtc |
39318779 |
T |
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| Q |
115 |
aatggctcaaattagcgaccatgcatgaggccgaacaaaaatcataggccaaactcaatcatcgaaccaagtcaacaaccttggatccatcctgcttccc |
214 |
Q |
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| T |
39318780 |
aatggatcaaattagcgaccatgaa----gccgaacaaaaatcataggccaaactcaatcatcgaaccaagtcaacaaccttggatccatcctgcttccc |
39318875 |
T |
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| Q |
215 |
aaatgcctccaacgactaaccaaggaccattcactctcaaacttcctaacgacacataatagacaaagatagacattgatggcacaccgcttcgtaaggt |
314 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39318876 |
aaatgcctccaacgactaaccaaggaccgttcactctcaaacgtcctaacgacacataatagacaaagatagacattgatggcacaccgcttcgtaaggt |
39318975 |
T |
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| Q |
315 |
tcccattcaaacaactaacaactcgaaaatcaagccttcctcacatatgtatgatgcacaaactctatcctaaaacctctcaatcatttactctctaact |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
39318976 |
tcccattcaaacaactaacaactcgaaaatcaagccttcctcgcatatgtaagatgcacaaactctatcctaaaacctctc-ttcatttactctctaact |
39319074 |
T |
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| Q |
415 |
gacttgagtgtcaaaatgtttgcaggtacctctactgc |
452 |
Q |
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| T |
39319075 |
gacttgagtgtcaaagtgtttgcaggtacctctactgc |
39319112 |
T |
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