View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18617_low_8 (Length: 425)
Name: NF18617_low_8
Description: NF18617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18617_low_8 |
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| [»] scaffold0103 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 9 - 244
Target Start/End: Complemental strand, 16700141 - 16699906
Alignment:
| Q |
9 |
acatcatcaaaacaacaacacaagcaaagcaagctttatttatgttagatatcttgaggatcacggacatgtggattcgataacaagataaatggatcat |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16700141 |
acatcatcaaaacaacaacacaagcaaagcaagctttatttatgttagatatcttgaggatcacggacatgtggattcgataacaagataaatggatcat |
16700042 |
T |
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| Q |
109 |
tgcacttctctgctatgctataaaaggtatcaccttctctaacaacgtaaaattcatcacactcttttgcatcattaattttaagtagtgctgatgctat |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
16700041 |
tgcacttctctgctatgctataaaaggtatcaccttctctaacaacgtaaaattcatcacactcttttgcatcattaattttgagtagtgctgatgctat |
16699942 |
T |
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| Q |
209 |
caacactaaggtaaaagaacgtaaaacaaatactcc |
244 |
Q |
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| T |
16699941 |
caacactaaggtaaaagaacgtaaaacaaatactcc |
16699906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 281 - 418
Target Start/End: Complemental strand, 16699797 - 16699660
Alignment:
| Q |
281 |
agatgaaataaattaaataatttcttgactacaattaatccattcnnnnnnnnnnnnnnnnnncttcttgactactatgacttattactttacgaagaaa |
380 |
Q |
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| T |
16699797 |
agatgaaataaattaaaaaatttcttgactacaattaatccattc-aaaaaaagaaaaaaaaacttcttgactacaatgacttattactttacgaagaaa |
16699699 |
T |
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| Q |
381 |
aacannnnnnngactgattatgaag-aaaagctcaacaa |
418 |
Q |
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| T |
16699698 |
aacatttttttgactgattatgaagaaaaagctcaacaa |
16699660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 44
Target Start/End: Complemental strand, 22846358 - 22846323
Alignment:
| Q |
9 |
acatcatcaaaacaacaacacaagcaaagcaagctt |
44 |
Q |
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| T |
22846358 |
acatcatcaaaacaacaacacatgcaaagcaagctt |
22846323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 68 - 169
Target Start/End: Complemental strand, 17322679 - 17322578
Alignment:
| Q |
68 |
atcacggacatgtggattcgataacaagataaatggatcattgcacttctctgctatgctataaaaggtatcaccttctctaacaacgtaaaattcatca |
167 |
Q |
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|||| |||||| |||||| || ||||||||| || |||||| |||||||| ||||| |||||| |||| || |||||| |||| | |||||||||||| |
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| T |
17322679 |
atcatggacatttggattggagaacaagatagattgatcatcacacttctccgctatactataataggtttccccttctttaaccatctaaaattcatca |
17322580 |
T |
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| Q |
168 |
ca |
169 |
Q |
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|| |
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| T |
17322579 |
ca |
17322578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0103 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0103
Description:
Target: scaffold0103; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 43
Target Start/End: Original strand, 35971 - 36005
Alignment:
| Q |
9 |
acatcatcaaaacaacaacacaagcaaagcaagct |
43 |
Q |
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| T |
35971 |
acatcatcaaaacaacaacacaggcaaagcaagct |
36005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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