View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18618_high_3 (Length: 487)
Name: NF18618_high_3
Description: NF18618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18618_high_3 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 420; Significance: 0; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 15 - 466
Target Start/End: Original strand, 41659279 - 41659730
Alignment:
| Q |
15 |
cataggagatacatgcagaattctcatacctgatgatgattcaccttgagcagcattgctatcatccacccactttcgcttcaactttctcagctcacaa |
114 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41659279 |
cataggagatacatgcagaactctcatacctgatgatgattcaccttgagcagcattgctatcatccacccactttcgcttcaactttctcagctcacaa |
41659378 |
T |
|
| Q |
115 |
acttccaactccaattcattattcttctttcttagctctctaatgatatctccttcaactaaactagttttcttaacttcctccaacaatgtttcataat |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41659379 |
acttccaactccaattcattattcttctttcttagctctctaatgatgtctccttcaactaaactagttttcttaacttcctccaacaatgtttcataat |
41659478 |
T |
|
| Q |
215 |
tattctgtgctctttttcctctttcgcatagttcctctctttttctcaaatcttcttcagcttgaaacctcatcagtctctccaagtcaaacttctcttg |
314 |
Q |
| |
|
|| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41659479 |
tactctgtgccctttttcctctttcgcatagttcctctctttttctcaaatcttcttcagcttgaaacctcatcagtctctccaagtcaaacttctcttg |
41659578 |
T |
|
| Q |
315 |
aaaatgcagaatctctgtctgtagtctctcatatctactcactaaaaccttttcaagttcatcaaactgttctgtccgaaacgctgtacgcgacaccgaa |
414 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41659579 |
aaaatgtagaatctctgtgtgtagtctctcatatctactcactaaaaccttttcaagttcatcaaactgttctgtccgaaacgctgtacgcgacaccgaa |
41659678 |
T |
|
| Q |
415 |
acaagttcctgaatgctcatgtctttcaagtttctatggtcattcgaacaca |
466 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||| ||||||| |
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|
| T |
41659679 |
acaagttcctgaatgctcatgtcttccaagtttctatggtcatttgaacaca |
41659730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 70 - 456
Target Start/End: Original strand, 41708707 - 41709093
Alignment:
| Q |
70 |
ttgctatcatccacccactttcgcttcaactttctcagctcacaaacttccaactccaattcattattcttctttcttagctctctaatgatatctcctt |
169 |
Q |
| |
|
|||||||||| |||||| || ||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||| |||| | ||| || |
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|
| T |
41708707 |
ttgctatcattcacccatttctccttcaactttctcagttcacaaacttctaactccaattcattgttcttctttcttagctctccaatggtgtcttttt |
41708806 |
T |
|
| Q |
170 |
caactaaactagttttcttaacttcctccaacaatgtttcataattattctgtgctctttttcctctttcgcatagttcctctctttttctcaaatcttc |
269 |
Q |
| |
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|| |||| | |||||||||||||||| ||| || ||||||||||||| ||||||||||| ||| |||| || |||||||||||||||||||||||||| |
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| T |
41708807 |
cagctaagtttgttttcttaacttccttcaataacttttcataattattttgtgctcttttccctttttcacacagttcctctctttttctcaaatcttc |
41708906 |
T |
|
| Q |
270 |
ttcagcttgaaacctcatcagtctctccaagtcaaacttctcttgaaaatgcagaatctctgtctgtagtctctcatatctactcactaaaaccttttca |
369 |
Q |
| |
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|| |||||||||||| | | |||||| |||| ||||||||||| || | |||||| | | |||||||| |||||||||||||||||||| |||| |
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|
| T |
41708907 |
ctcggcttgaaacctcgtttttttctccatttcaaccttctcttgaagatctataatctcattttctagtctcttatatctactcactaaaacctcttca |
41709006 |
T |
|
| Q |
370 |
agttcatcaaactgttctgtccgaaacgctgtacgcgacaccgaaacaagttcctgaatgctcatgtctttcaagtttctatggtca |
456 |
Q |
| |
|
| | |||||||||||||||| |||| | ||| ||| ||||| | || |||||||||||| ||||| ||| |||||| |||||||| |
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|
| T |
41709007 |
attctatcaaactgttctgtcagaaatgttgttcgcaacaccaacaccagttcctgaatgttcatgccttccaagttcatatggtca |
41709093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 93 - 326
Target Start/End: Original strand, 41686349 - 41686585
Alignment:
| Q |
93 |
cttcaactttctcagctcacaaacttccaactccaattcattattcttctttcttagctctctaatgatatctccttcaactaaactagtttt---ctta |
189 |
Q |
| |
|
|||||||||||||||||||| |||||| |||||||||||| | ||||||||||||||||||| |||||| |||| ||| | ||||||||||| |||| |
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|
| T |
41686349 |
cttcaactttctcagctcacgaacttctaactccaattcactgttcttctttcttagctctccaatgatgtctctatcacccaaactagttttttcctta |
41686448 |
T |
|
| Q |
190 |
acttcctccaacaatgtttcataattattctgtgctctttttcctctttcgcatagttcctctctttttctcaaatcttcttcagcttgaaacctcatca |
289 |
Q |
| |
|
||||||| ||||||| ||||||||||||| ||||||||| | |||||||| || |||||||||||||||||||||||||| ||||||||||||||| | | |
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|
| T |
41686449 |
acttccttcaacaatttttcataattattttgtgctcttatccctctttcacaaagttcctctctttttctcaaatcttcctcagcttgaaacctcgtta |
41686548 |
T |
|
| Q |
290 |
gtctctccaagtcaaacttctcttgaaaatgcagaat |
326 |
Q |
| |
|
|||||||||| |||||||||||||||| ||| ||||| |
|
|
| T |
41686549 |
gtctctccaattcaaacttctcttgaagatgtagaat |
41686585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 70 - 445
Target Start/End: Original strand, 41717779 - 41718154
Alignment:
| Q |
70 |
ttgctatcatccacccactttcgcttcaactttctcagctcacaaacttccaactccaattcattattcttctttcttagctctctaatgatatctcctt |
169 |
Q |
| |
|
|||||||||| |||||| || ||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||| |||| | ||| || |
|
|
| T |
41717779 |
ttgctatcattcacccatttctccttcaactttctcagttcacaaacttctaactccaattcattgttcttctttcttagctctccaatggtgtcttttt |
41717878 |
T |
|
| Q |
170 |
caactaaactagttttcttaacttcctccaacaatgtttcataattattctgtgctctttttcctctttcgcatagttcctctctttttctcaaatcttc |
269 |
Q |
| |
|
|| |||| | |||||||||||||||| ||| || ||||||||||||| ||||||||||| ||| |||| || |||||||||||||||||||||||||| |
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|
| T |
41717879 |
cagctaagtttgttttcttaacttccttcaataacttttcataattattttgtgctcttttccctttttcacacagttcctctctttttctcaaatcttc |
41717978 |
T |
|
| Q |
270 |
ttcagcttgaaacctcatcagtctctccaagtcaaacttctcttgaaaatgcagaatctctgtctgtagtctctcatatctactcactaaaaccttttca |
369 |
Q |
| |
|
|| ||||||||||| | | |||||| |||| ||||||||||| || | |||||| | | |||||||| ||||||||||||||||| | |||| |
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|
| T |
41717979 |
ctcggcttgaaaccttgtttttttctccatttcaaccttctcttgaagatctataatctcattttctagtctcttatatctactcactaaaatcccttca |
41718078 |
T |
|
| Q |
370 |
agttcatcaaactgttctgtccgaaacgctgtacgcgacaccgaaacaagttcctgaatgctcatgtctttcaagt |
445 |
Q |
| |
|
| | |||||| | ||||||| |||| ||||| ||| ||||||| || |||||||||| | ||||| ||| ||||| |
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|
| T |
41718079 |
attctatcaaattcttctgtcagaaatgctgttcgcaacaccgacaccagttcctgaacgttcatgccttccaagt |
41718154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 68 - 463
Target Start/End: Complemental strand, 41688008 - 41687610
Alignment:
| Q |
68 |
cattgctatcatccacccactttcgcttcaactttctcagctcacaaacttccaactccaattcattattcttctttcttagctctctaatgatatctcc |
167 |
Q |
| |
|
||||||||||||| ||||| ||| |||||||||||||||||||||||||| |||||||||||| | | ||||||||| ||| || ||| | |||| |
|
|
| T |
41688008 |
cattgctatcatcgacccatttttcattcaactttctcagctcacaaacttcgaactccaattcaatgtctttctttcttggctttccgatgttgtctct |
41687909 |
T |
|
| Q |
168 |
ttcaactaaactagttttct---taacttcctccaacaatgtttcataattattctgtgctctttttcctctttcgcatagttcctctctttttctcaaa |
264 |
Q |
| |
|
|||| ||||||||||| | | ||||||| |||||||| ||||||||| | ||||||||||| |||||||| ||||||||||||||||| |||| | |
|
|
| T |
41687908 |
ctcaatcaaactagttttttgtttgacttccttcaacaatgcttcataattttgttgtgctcttttccctctttcacatagttcctctcttttcctcaca |
41687809 |
T |
|
| Q |
265 |
tcttcttcagcttgaaacctcatcagtctctccaagtcaaacttctcttgaaaatgcagaatctctgtctgtagtctctcatatctactcactaaaacct |
364 |
Q |
| |
|
||||| ||| |||||||||| | ||| | |||| |||||||||||||||| ||| ||||| | || || ||| ||| || |||| |||||||||||| |
|
|
| T |
41687808 |
tcttcctcaacttgaaaccttgttagtttttccatttcaaacttctcttgaagatgtagaattttcgtttgcagtttcttatctctagtcactaaaacct |
41687709 |
T |
|
| Q |
365 |
tttcaagttcatcaaactgttctgtccgaaacgctgtacgcgacaccgaaacaagttcctgaatgctcatgtctttcaagtttctatggtcattcgaac |
463 |
Q |
| |
|
||||| | |||||| | |||||| |||||| ||| || |||| ||||| ||||| |||||||||||||||| ||| |||||||||||| |||||| |
|
|
| T |
41687708 |
cttcaacattatcaaagtcttctgttagaaacgatgtgcgtaacacagaaaccagttcatgaatgctcatgtcttccaaatttctatggtcactcgaac |
41687610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 113 - 313
Target Start/End: Complemental strand, 14691033 - 14690833
Alignment:
| Q |
113 |
aaacttccaactccaattcattattcttctttcttagctctctaatgatatctccttcaactaaactagttttcttaacttcctccaacaatgtttcata |
212 |
Q |
| |
|
||||||||||||||||||||||||| ||| || ||||||| ||| | |||| |||| |||||||| ||||||||| |||| |||| || ||||||| |
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|
| T |
14691033 |
aaacttccaactccaattcattattattcatttttagctcaacgatgctttctctttcacctaaactatttttcttaatttccatcaacgatttttcata |
14690934 |
T |
|
| Q |
213 |
attattctgtgctctttttcctctttcgcatagttcctctctttttctcaaatcttcttcagcttgaaacctcatcagtctctccaagtcaaacttctct |
312 |
Q |
| |
|
|||||||||||| |||| |||| || || |||||||| || || |||||||||| |||||||| ||||| ||||||||| |||||||||||| |
|
|
| T |
14690933 |
attattctgtgccattttagctctctcacacagttcctcactcttcttcaaatcttcctcagcttgtaacctagcttgtctctccatatcaaacttctct |
14690834 |
T |
|
| Q |
313 |
t |
313 |
Q |
| |
|
| |
|
|
| T |
14690833 |
t |
14690833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 179 - 282
Target Start/End: Complemental strand, 14682519 - 14682416
Alignment:
| Q |
179 |
tagttttcttaacttcctccaacaatgtttcataattattctgtgctctttttcctctttcgcatagttcctctctttttctcaaatcttcttcagcttg |
278 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||||||||||||||| |||| ||||| || || | |||||| || || ||||| ||||| |||| ||| |
|
|
| T |
14682519 |
tagttttcttaacttccttcaacaatttttcataattattctgtgcttttttccctctctcacacatttcctccctcttcctcaattcttcctcagattg |
14682420 |
T |
|
| Q |
279 |
aaac |
282 |
Q |
| |
|
|||| |
|
|
| T |
14682419 |
aaac |
14682416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 341 - 436
Target Start/End: Complemental strand, 14682381 - 14682286
Alignment:
| Q |
341 |
tctcatatctactcactaaaaccttttcaagttcatcaaactgttctgtccgaaacgctgtacgcgacaccgaaacaagttcctgaatgctcatgt |
436 |
Q |
| |
|
||||||||||||||||||||| | ||||| |||||| ||||||||| |||||||||||||| | || ||||| | || ||||||||||||| |
|
|
| T |
14682381 |
tctcatatctactcactaaaatttcttcaacactatcaaattgttctgtcagaaacgctgtacgcaaaactgaaaccaaatcttgaatgctcatgt |
14682286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 41686295 - 41686346
Alignment:
| Q |
15 |
cataggagatacatgcagaattctcatacctgatgatgattcaccttgagca |
66 |
Q |
| |
|
|||| ||||||||||||||||| | |||||||||||||||||| || ||||| |
|
|
| T |
41686295 |
cataagagatacatgcagaatttttatacctgatgatgattcatctggagca |
41686346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 75 - 146
Target Start/End: Complemental strand, 2439189 - 2439118
Alignment:
| Q |
75 |
atcatccacccactttcgcttcaactttctcagctcacaaacttccaactccaattcattattcttctttct |
146 |
Q |
| |
|
|||||||||||| ||| | ||||||||||||||||||| | ||||||||||||| ||| ||||||||||| |
|
|
| T |
2439189 |
atcatccacccatttttccaccaactttctcagctcacaagcatccaactccaatttattgttcttctttct |
2439118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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