View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18618_low_1 (Length: 613)
Name: NF18618_low_1
Description: NF18618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18618_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 385; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 173 - 598
Target Start/End: Original strand, 33514293 - 33514718
Alignment:
| Q |
173 |
ctgattggtgtaggtgaggnnnnnnnccataaaaggcagcggagaagaaatataccaaacagagcttgtacaattattttcggaagaggatgaggtaagc |
272 |
Q |
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| T |
33514293 |
ctgattggtgtaggtgaggaaaaaaaccataaaaggcagcggagaagaaatataccaaacagagcttgtacaattattttcggaagaggatgaggtaggc |
33514392 |
T |
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| Q |
273 |
ttcataacttcttgtatttacatctttggacttacatcaatatatatatgtgtgtgtgaaatatcctttttactattcacaggtacgtgtgttttttgcg |
372 |
Q |
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| T |
33514393 |
ttcataacttcttgtatttacatttttggacttacatcaatatatatatgtgtgtgtgaaatatcctttttactattcacaggtacgtgtgttttttgcg |
33514492 |
T |
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| Q |
373 |
atgcttgatgatgagctgaacaaagtgaaccaattttacattaaacaagagaatgaattcattgagagaagagaagccttgaacaaacagcttcagattt |
472 |
Q |
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| T |
33514493 |
atgcttgatgatgagctaaacaaggtgaaccaattttacattaaacaagagaatgaattcattgagagaagagaagccttgaacaaacagcttcagattt |
33514592 |
T |
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| Q |
473 |
tgcaagacctaaagcaaattattaatgatagacgacggaaaaattatccgccaccgaaagcaaataatacagagactttcccgcgttctccagcacggga |
572 |
Q |
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| T |
33514593 |
tgcaagacctaaagcaaattattaatgatagacgacggaaaaattatccgccaccgaaagcaaataatacagagactttcccgcgttctccaacacggga |
33514692 |
T |
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| Q |
573 |
ttctgattactcattaggttagtttt |
598 |
Q |
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| T |
33514693 |
ttctgattactcattaggttagtttt |
33514718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 33514096 - 33514141
Alignment:
| Q |
7 |
attctaaaataagcagcataatttttatttttgaagagtgagcagc |
52 |
Q |
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| T |
33514096 |
attctaaaataagcagcataatttttatttttgaagagtgagcagc |
33514141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 233 - 281
Target Start/End: Complemental strand, 44064166 - 44064118
Alignment:
| Q |
233 |
agagcttgtacaattattttcggaagaggatgaggtaagcttcataact |
281 |
Q |
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| T |
44064166 |
agagcttgtgcaatttttttcggaggaggatgaggtaggcttcataact |
44064118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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