View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18618_low_10 (Length: 262)
Name: NF18618_low_10
Description: NF18618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18618_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 51939672 - 51939925
Alignment:
| Q |
1 |
ttttgtgacaaacgtccacatgtacctccacctctgtgataaagcactagtacgaactgcatagttagtaggaagaaaagagagaatgtgagcaataata |
100 |
Q |
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| T |
51939672 |
ttttgtgacaaacgtccacatgtacctccacctctgtgataaagcactagtacgaactgcatagttagtaggaagaaaagagagaatgtgagcaataata |
51939771 |
T |
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| Q |
101 |
cagtcagataggcggcttatgatgtcttgaccctcactggatttctgcctcttc---caaggctgtgctgctgcctcagatgtggatgcggagtgcatca |
197 |
Q |
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| T |
51939772 |
cagtcagataggcggcttatgatgtcttgaccctcactggatttctgcctcttcttccaaggctgtgctgctgcctcagatgtggatgcggagtgcatca |
51939871 |
T |
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| Q |
198 |
tctttgtatg----gaaattgcctgcaagtaaaatgagatgatcaagtaaaaaa |
247 |
Q |
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| T |
51939872 |
tctttgtatatatcgaaattgcctacaagtaaaatgagatgatcaagtaaaaaa |
51939925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 27 - 154
Target Start/End: Original strand, 51944696 - 51944823
Alignment:
| Q |
27 |
tccacctctgtgataaagcactagtacgaactgcatagttagtaggaagaaaagagagaatgtgagcaataatacagtcagataggcggcttatgatgtc |
126 |
Q |
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| T |
51944696 |
tccacctctgtgataaagcaccggtacgaactgcatatttagtaggaagaaaagaaagaatgcgaccgataacaaagtcaggtaggtcgcttatcatatc |
51944795 |
T |
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| Q |
127 |
ttgaccctcactggatttctgcctcttc |
154 |
Q |
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| T |
51944796 |
ttgaccctcactggatttatgtctcttc |
51944823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 37420360 - 37420501
Alignment:
| Q |
1 |
ttttgtgacaaacgtccacatgtacctccacctctgtgataaagcactagtacgaactgcatagttagtaggaagaaaagagagaatgtgagcaataata |
100 |
Q |
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|||||||||||||||||||||||| |||||||| |||||||| |||| || || ||||||| | | || |||||||||| |||||||| ||||| ||| |
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| T |
37420360 |
ttttgtgacaaacgtccacatgtatatccacctccgtgataaaacacttgtgcggactgcatcttcaatacgaagaaaagaaagaatgtgggcaatgata |
37420459 |
T |
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| Q |
101 |
cagtcagataggcggcttatgatgtcttgaccctcactggat |
142 |
Q |
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| T |
37420460 |
aagacaggtaggttgcttatgatatcttgaccagcactggat |
37420501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 134
Target Start/End: Original strand, 34755803 - 34755910
Alignment:
| Q |
27 |
tccacctctgtgataaagcactagtacgaactgcatagttagtaggaagaaaagagagaatgtgagcaataatacagtcagataggcggcttatgatgtc |
126 |
Q |
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||||| ||| ||||||| | |||||||||||||| | ||||||||||||||| | ||||||| | ||||||| ||||| |||| |||||| | ||| |
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| T |
34755803 |
tccacttctttgataaaacgctagtacgaactgcttccttagtaggaagaaaaaaaagaatgtaaccaataatgtggtcaggtaggttgcttatcaagtc |
34755902 |
T |
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| Q |
127 |
ttgaccct |
134 |
Q |
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|||||||| |
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| T |
34755903 |
ttgaccct |
34755910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 34747440 - 34747525
Alignment:
| Q |
1 |
ttttgtgacaaacgtccacatgtacctccacctctgtgataaagcactagtacgaactgcatagttagtaggaagaaaagagagaa |
86 |
Q |
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|||||||| ||| ||||| | ||| ||||||||| ||||||| |||| ||| |||||||| ||||||||||||||||| |||| |
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| T |
34747440 |
ttttgtgataaatgtccataggtatatccacctctttgataaaacactggtagaaactgcatccttagtaggaagaaaagaaagaa |
34747525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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