View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18618_low_2 (Length: 517)
Name: NF18618_low_2
Description: NF18618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18618_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 9 - 389
Target Start/End: Complemental strand, 39427024 - 39426644
Alignment:
| Q |
9 |
gaagaatatcccaaaatggaataagaaatggatttgtctacagatattcagctttgcttgccttgtagtctcaattgcagctgctgttggatcaattgct |
108 |
Q |
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| T |
39427024 |
gaagaaaatcccaaaatggaataagaaatggatttgtctacagatattcagctttgcttgccttgtagtctcaattgctgctgctgttggatcaattgct |
39426925 |
T |
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| Q |
109 |
ggagtcttagttgatctaaagaagtacacaccattccaatcaagttattaagcttccttagacttgctatatgtaatgtacgaaactcctgcatcggcaa |
208 |
Q |
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| T |
39426924 |
ggagtcttagttgatctaaagaagtacacaccattccaatcaagttattaagcttccttagacttgctatatgtaatgtacgaaactcctgcatcggcaa |
39426825 |
T |
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| Q |
209 |
ttgtaagaatacgtttgtatgtacaattatgttataaatcaattgaatatttgaattattatcacccattatcnnnnnnnnnnnnnnggtcaaaaattat |
308 |
Q |
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| T |
39426824 |
ttgtaagaatacgtttgtatgtacaattatgttataaatcaattgaatatttgaattattaccacccattatctttctcttttttttggtcaaaaattat |
39426725 |
T |
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| Q |
309 |
gatccattatcttgttaaatcaattggatatacctacttactatatatgcagttctctttctgcattgtgatttatgacca |
389 |
Q |
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| T |
39426724 |
gatccattatcttgttaaatcaattggatatacctacttactatatatgcacttctctttctgcattgtgatttatgacca |
39426644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 463 - 499
Target Start/End: Complemental strand, 39426632 - 39426596
Alignment:
| Q |
463 |
tggaataccacaagtcattttcaatctaatacacatt |
499 |
Q |
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| T |
39426632 |
tggaataccacaagtcattttcaatctaatacacatt |
39426596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 9 - 164
Target Start/End: Original strand, 6251185 - 6251340
Alignment:
| Q |
9 |
gaagaatatcccaaaatggaataagaaatggatttgtctacagatattcagctttgcttgccttgtagtctcaattgcagctgctgttggatcaattgct |
108 |
Q |
| |
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|||||| ||||||||||||| || ||||||||||| ||||| |||||||||||||||||||||||||| | | |||| |||| |||||||||||||||| |
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| T |
6251185 |
gaagaaaatcccaaaatggagcaataaatggatttgcctacaaatattcagctttgcttgccttgtagtatgacttgctgctgttgttggatcaattgct |
6251284 |
T |
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| Q |
109 |
ggagtcttagttgatctaaagaagtacacaccattccaatcaagttattaagcttc |
164 |
Q |
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|||||||| |||||||| ||||| |||| |||||||||||||| |||||||||||| |
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| T |
6251285 |
ggagtcttggttgatctgaagaaatacaaaccattccaatcaaattattaagcttc |
6251340 |
T |
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