View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18618_low_5 (Length: 413)
Name: NF18618_low_5
Description: NF18618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18618_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 370; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 18 - 399
Target Start/End: Complemental strand, 38448464 - 38448084
Alignment:
| Q |
18 |
ataagctaacttgctctcgtctacagtccttcagaaatcacttagtatgtatacatctcgtggtagaatgccatgtaggtttctaatgacatcgttgtgt |
117 |
Q |
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| T |
38448464 |
ataagctaacttgctctcgtctacaatccttcagaaatcacttagtatgtatacatctcgtggtagaatgccatgtaggtttctaatgacatcgttgtgt |
38448365 |
T |
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| Q |
118 |
tgaacaaaagatctggatctatgccttctccatatatagttgtggaagcttgtcatgatcaaagttattgtcatcgtcatttgagtaattcgttgatgtc |
217 |
Q |
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| T |
38448364 |
tgaacaaaagatctggatctatgccttctccatatatagttgtggaagcttgtcatgatcaaagttattgtcatcgtcatt-gagtaattcgttgatgtc |
38448266 |
T |
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| Q |
218 |
aaaccaaagtttcggattcattaagtcatcatggtttacttcaaaatcatgctccgaagaaactggctcctccccttttccatacatagttgtgtccaag |
317 |
Q |
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| T |
38448265 |
aaaccaaagtttcggattcattaagtcatcatggtttacttcaaaatcatgctccgaagaaactggctcctccccttttccatacatagttgtgtccaag |
38448166 |
T |
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| Q |
318 |
gaatcatttacatcatgctgaagcttgtcatgtaagttgttaatgtctttttcatataagtcatagttaaaccaaatatctg |
399 |
Q |
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| T |
38448165 |
gaatcatttacatcatgctgaagcttgtcatgtaagttgttaatgtctttttcatataagtcatagttaaaccaaatatctg |
38448084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 294
Target Start/End: Complemental strand, 38448078 - 38448021
Alignment:
| Q |
237 |
attaagtcatcatggtttacttcaaaatcatgctccgaagaaactggctcctcccctt |
294 |
Q |
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| T |
38448078 |
attaagtcgttatggtttccttcaaaatcgttctccgaagaaactggcttcttccctt |
38448021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 221 - 279
Target Start/End: Complemental strand, 38343420 - 38343362
Alignment:
| Q |
221 |
ccaaagtttcggattcattaagtcatcatggtttacttcaaaatcatgctccgaagaaa |
279 |
Q |
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| T |
38343420 |
ccaaagttccggattcattatgtcgtcatggtttacttcaacatcgctctccgaagaaa |
38343362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 221 - 279
Target Start/End: Complemental strand, 38447613 - 38447555
Alignment:
| Q |
221 |
ccaaagtttcggattcattaagtcatcatggtttacttcaaaatcatgctccgaagaaa |
279 |
Q |
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| T |
38447613 |
ccaaagttccggattcattatgtcgtcatggtttacttcaacatcgctctccgaagaaa |
38447555 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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