View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18618_low_6 (Length: 367)
Name: NF18618_low_6
Description: NF18618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18618_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 66 - 351
Target Start/End: Original strand, 47475108 - 47475393
Alignment:
| Q |
66 |
ctttaatgtatatgaaatttgtcaatttagtttcaatttattctctttcatcttaatcatacggactaaatgaatttatataatttaaagactacttatc |
165 |
Q |
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| T |
47475108 |
ctttaatgtatatgaaatttgtcaatttagtttcaatttattctctttcatcttaatcatacggactaaatgaatttatataatttaaagactacttatc |
47475207 |
T |
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| Q |
166 |
atatttacatagtttagaagctaaatttgatagacggtgatagtttagagaataaattgataatttattcgagtttggatgactgagaatacaaaaaaga |
265 |
Q |
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| T |
47475208 |
atatttacatagtttagaaactaaatttgatagacggtgatagtttagagaataaattgataatttattcgagtttggatgactgagaatacaaaaaaga |
47475307 |
T |
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| Q |
266 |
gtaaagaataaggaagcaagtaatcaacacatcgcatgagattttagtatcatgtcctttggaatgatatcacaaaggggcaatat |
351 |
Q |
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| T |
47475308 |
gtaaagaataaggaagcaagtaatcaacacatcgcatgagattttagtatcatgtcctttggaatgatatcacaaaggggcaatat |
47475393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 182
Target Start/End: Complemental strand, 8121393 - 8121351
Alignment:
| Q |
140 |
tttatataatttaaagactacttatcatatttacatagtttag |
182 |
Q |
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| T |
8121393 |
tttatatactttaaagactacttatcatatttatatagtttag |
8121351 |
T |
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