View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18619_high_3 (Length: 244)
Name: NF18619_high_3
Description: NF18619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18619_high_3 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 20 - 244
Target Start/End: Complemental strand, 5441431 - 5441210
Alignment:
| Q |
20 |
cggcgtgtccatctcttacatcatgtaaaactttaaagaaaggtaaagcattagaaatacatgaaccacgcattttactgattcaagtaatgataaaaat |
119 |
Q |
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| T |
5441431 |
cggcgtgtccatctcttacatcatgtaaaactttaaagaaaggtaaagcattagaaatacatgaaccacgcattttactgattcaagtaatgataaaaat |
5441332 |
T |
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| Q |
120 |
gaattgatattacttgttttctagatcatatcgctcaaccagtgtgtacccacacaattaagaagaaggtaataaacgaaggtgnnnnnnnccgtataca |
219 |
Q |
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| T |
5441331 |
gaattgatattacttgttttctagatcgtctcgctcaaccagtgcgtacccacccaattaagaagaaggtaa---acgaaggtgaaaaaaaccgtataca |
5441235 |
T |
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| Q |
220 |
taagaaactattggaattgactctt |
244 |
Q |
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| T |
5441234 |
taagaaactattggaattgactctt |
5441210 |
T |
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