View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1861_low_1 (Length: 446)

Name: NF1861_low_1
Description: NF1861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1861_low_1
NF1861_low_1
[»] chr3 (37 HSPs)
chr3 (16-432)||(26205111-26205527)
chr3 (16-432)||(26110828-26111244)
chr3 (17-432)||(26233174-26233589)
chr3 (120-432)||(26139769-26140080)
chr3 (128-432)||(26127828-26128126)
chr3 (128-432)||(26177878-26178176)
chr3 (125-431)||(26129127-26129427)
chr3 (126-431)||(26179183-26179482)
chr3 (120-397)||(26113352-26113632)
chr3 (22-126)||(26179506-26179610)
chr3 (35-126)||(26202039-26202130)
chr3 (125-272)||(26235772-26235911)
chr3 (22-125)||(26235935-26236041)
chr3 (35-126)||(26128152-26128243)
chr3 (35-126)||(26178202-26178293)
chr3 (35-126)||(26113650-26113741)
chr3 (35-126)||(26140098-26140189)
chr3 (300-380)||(26235691-26235771)
chr3 (22-126)||(26129450-26129560)
chr3 (304-380)||(26208950-26209026)
chr3 (224-313)||(26629161-26629250)
chr3 (200-272)||(26209031-26209104)
chr3 (35-91)||(28005122-28005178)
chr3 (201-272)||(27979955-27980026)
chr3 (23-126)||(28003461-28003564)
chr3 (120-162)||(26201979-26202021)
chr3 (198-272)||(28005313-28005387)
chr3 (198-288)||(8539628-8539718)
chr3 (22-56)||(11420331-11420365)
chr3 (198-296)||(28149237-28149335)
chr3 (23-57)||(28151203-28151237)
chr3 (22-103)||(19476135-19476216)
chr3 (37-74)||(27389394-27389431)
chr3 (355-392)||(27775753-27775790)
chr3 (198-307)||(28036914-28037023)
chr3 (23-91)||(28036704-28036772)
chr3 (198-286)||(28083083-28083171)
[»] scaffold1142 (1 HSPs)
scaffold1142 (22-120)||(1331-1429)


Alignment Details
Target: chr3 (Bit Score: 413; Significance: 0; HSPs: 37)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 16 - 432
Target Start/End: Complemental strand, 26205527 - 26205111
Alignment:
Q  16 agtttgcttaaaaacatgttgcaactaatttacattttcatgcaatgcatttagctggagggccctacatcagaaataacagcagcagcaactgtgtcca 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26205527 agtttgcttaaaaacatgttgcaactaatttacattttcatgcaatgcatttagctggagggccctacatcagaaataacagcagcagcaactgtgtcca 26205428  T
Q  116 ccattacagaagaagttgttcctaaacaaaaggtatttccatttccacctattctaattgtattctttttgacactttaatagaattatactacaatcta 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26205427 ccattacagaagaagttgttcctaaacaaaaggtatttccatttccacctattctaattgtattctttttgacactttaatagaattatactacaatcta 26205328  T
Q  216 aagcatcattttacatttaagcagggtatcgagataaacgttgaagaaggaaatacagaagctaatgccaataaaataacatcgtcaactcagttagatg 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26205327 aagcatcattttacatttaagcagggtatcgagataaacgttgaagaaggaaatacagaagctaatgccaataaaataacatcgtcaactcagttagatg 26205228  T
Q  316 tagcagattcatcatcaggccagttagtcacttctgtgtgtaaaacatcttcacaggtgagtttatcttatgtaaccaacttttcaaacaagtagtgttg 415  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26205227 tagcagattcatcatcaggccagttagttacttctgtgtgtaaaacatcttcacaggtgagtttatcttatgtaaccaacttttcaaacaagtagtgttg 26205128  T
Q  416 tcatgttttttattcat 432  Q
    |||||||||||||||||    
T  26205127 tcatgttttttattcat 26205111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 16 - 432
Target Start/End: Complemental strand, 26111244 - 26110828
Alignment:
Q  16 agtttgcttaaaaacatgttgcaactaatttacattttcatgcaatgcatttagctggagggccctacatcagaaataacagcagcagcaactgtgtcca 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  26111244 agtttgcttaaaaacatgttgcaactaatttacattttcatgcaatgcatttagctggagggccctacatcagaaataacagcagcagcaactgtggcca 26111145  T
Q  116 ccattacagaagaagttgttcctaaacaaaaggtatttccatttccacctattctaattgtattctttttgacactttaatagaattatactacaatcta 215  Q
    |||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  26111144 ccattacacatgaagttgttcctaaacaaaaggtatttccatttccacctattctgattgtattctttttgacactttaatagaattatactacaatcta 26111045  T
Q  216 aagcatcattttacatttaagcagggtatcgagataaacgttgaagaaggaaatacagaagctaatgccaataaaataacatcgtcaactcagttagatg 315  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| ||||||||||||||||||||||||||||    
T  26111044 aagcatcgttttacatttaagcagggtatcgagataaacgttgaagaaggaaatacatcagctaatgccaagaaaataacatcgtcaactcagttagatg 26110945  T
Q  316 tagcagattcatcatcaggccagttagtcacttctgtgtgtaaaacatcttcacaggtgagtttatcttatgtaaccaacttttcaaacaagtagtgttg 415  Q
    |||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  26110944 tagcaggttcatcatcaggccagttagttacttctgagtgtaaaacatcttcacaggtgagtttatcttatgtaacaaacttttcaaacaagtagtgttg 26110845  T
Q  416 tcatgttttttattcat 432  Q
    |||||||||||||||||    
T  26110844 tcatgttttttattcat 26110828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 17 - 432
Target Start/End: Complemental strand, 26233589 - 26233174
Alignment:
Q  17 gtttgcttaaaaacatgttgcaactaatttacattttcatgcaatgcatttagctggagggccctacatcagaaataacagcagcagcaactgtgtccac 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  26233589 gtttgcttaaaaacatgttgcaactaatttacattttcatgcaatgcatttagctggaaggccctacatcagaaataacagcagcagcaactgtgtccac 26233490  T
Q  117 cattacagaagaagttgttcctaaacaaaaggtatttccatttccacctattctaattgtattctttttgacactttaatagaattatactacaatctaa 216  Q
    ||||||| | |||||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  26233489 cattacacatgaagttgttcctgaacaaaaggtatttccatttccacctattcttattgtattctatttgacactttaatagaattatactacaatctaa 26233390  T
Q  217 agcatcattttacatttaagcagggtatcgagataaacgttgaagaaggaaatacagaagctaatgccaataaaataacatcgtcaactcagttagatgt 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| |||||||||||||||||||||||||||||    
T  26233389 agcatcattttacatttaagcagggtatcgagataaacgttgaagaaggaaatacatcagctaatgccaagaaaataacatcgtcaactcagttagatgt 26233290  T
Q  317 agcagattcatcatcaggccagttagtcacttctgtgtgtaaaacatcttcacaggtgagtttatcttatgtaaccaacttttcaaacaagtagtgttgt 416  Q
    ||||| ||||||||| ||||||||||| |||||||  |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |    
T  26233289 agcaggttcatcatcgggccagttagttacttctgactgtaaaacatcttcacaggtgagtttatcttatgtaacaaacttttcaaacaagtagtgttat 26233190  T
Q  417 catgttttttattcat 432  Q
    ||||||||||||||||    
T  26233189 catgttttttattcat 26233174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 120 - 432
Target Start/End: Complemental strand, 26140080 - 26139769
Alignment:
Q  120 tacagaagaagttgttcctaaacaaaaggtatttccatttccacctattctaattgtattctttttgacactttaatagaattatactacaatctaaagc 219  Q
    |||| ||| ||||| ||||||||||||||||||||||||| | |||||| | |||||| ||||||||||||||||||  |||||||||||||||| || |    
T  26140080 tacacaagtagttgatcctaaacaaaaggtatttccatttgcccctattatgattgtactctttttgacactttaatttaattatactacaatcttaaac 26139981  T
Q  220 atcattttacatttaagcagggtatcgagataaacgttgaagaaggaaatacagaagctaatgccaataaaataacatcgtcaactcagttagatgtagc 319  Q
    ||| |||||||| ||||||||||||| ||||||| ||||||||||||||||||  || ||||||||| | |||| ||||||||||||| |||||||||      
T  26139980 atcgttttacatataagcagggtatccagataaatgttgaagaaggaaatacatcagttaatgccaagacaatagcatcgtcaactcatttagatgtaat 26139881  T
Q  320 agattcatcatcaggccagttagtcacttctgtgtgtaaaacatcttcacaggtgagtttatcttatgtaaccaacttttcaaacaagtagtgttgtcat 419  Q
    || ||||||||||||||||||||| ||||||| | |||||| |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||     
T  26139880 aggttcatcatcaggccagttagttacttctgagcgtaaaatatcttcactggtgagtttatcgtatgtaaccaacttttcaaacaagtagtgttgtca- 26139782  T
Q  420 gttttttattcat 432  Q
    ||||||| |||||    
T  26139781 gtttttttttcat 26139769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 128 - 432
Target Start/End: Complemental strand, 26128126 - 26127828
Alignment:
Q  128 aagttgttcctaaacaaaaggtatttccatttccacctattctaattgtattctttttgacactttaatagaattatactacaatctaaagcatcatttt 227  Q
    ||||||||||||||||||||| |||||||||||| ||||| || ||||||||||||||| ||||| ||| ||||||| ||||||||| || |||||||||    
T  26128126 aagttgttcctaaacaaaaggcatttccatttcctcctatgctgattgtattctttttggcacttcaattgaattatcctacaatcttaaacatcatttt 26128027  T
Q  228 acatttaagcagggtatcgagataaacgttgaagaaggaaatacagaagctaatgccaataaaataacatcgtcaactcagttagatgtagcagattcat 327  Q
    |||||||||||||||||| | ||||| ||||||||||||| | ||  || ||||||||| | |||||||||||||||||| ||||||||||||| |||||    
T  26128026 acatttaagcagggtatccaaataaatgttgaagaaggaactgcatcagataatgccaagacaataacatcgtcaactcatttagatgtagcaggttcat 26127927  T
Q  328 catcaggccagttagtcacttctgtgtgtaaaacatcttcacaggtgagtttat-ct--tatgtaaccaacttttcaaacaagtagtgttgtcatgtttt 424  Q
    ||||||||||||||| |         || |||||||||||||||||||||| || ||  |||||| |||||||||||||||||||||||||||||||| |    
T  26127926 catcaggccagttagac---------tgcaaaacatcttcacaggtgagttcatactagtatgtagccaacttttcaaacaagtagtgttgtcatgttat 26127836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 128 - 432
Target Start/End: Complemental strand, 26178176 - 26177878
Alignment:
Q  128 aagttgttcctaaacaaaaggtatttccatttccacctattctaattgtattctttttgacactttaatagaattatactacaatctaaagcatcatttt 227  Q
    ||||||||||||||||||||| |||||||||||| ||||| || ||||||||||||||| ||||| ||| ||||||| ||||||||| || |||||||||    
T  26178176 aagttgttcctaaacaaaaggcatttccatttcctcctatgctgattgtattctttttggcacttcaattgaattatcctacaatcttaaacatcatttt 26178077  T
Q  228 acatttaagcagggtatcgagataaacgttgaagaaggaaatacagaagctaatgccaataaaataacatcgtcaactcagttagatgtagcagattcat 327  Q
    |||||||||||||||||| | ||||| ||||||||||||| | ||  || ||||||||| | |||||||||||||||||| ||||||||||||| |||||    
T  26178076 acatttaagcagggtatccaaataaatgttgaagaaggaactgcatcagataatgccaagacaataacatcgtcaactcatttagatgtagcaggttcat 26177977  T
Q  328 catcaggccagttagtcacttctgtgtgtaaaacatcttcacaggtgagtttat-ct--tatgtaaccaacttttcaaacaagtagtgttgtcatgtttt 424  Q
    ||||||||||||||| |         || |||||||||||||||||||||| || ||  |||||| |||||||||||||||||||||||||||||||| |    
T  26177976 catcaggccagttagac---------tgcaaaacatcttcacaggtgagttcatactagtatgtagccaacttttcaaacaagtagtgttgtcatgttat 26177886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 125 - 431
Target Start/End: Complemental strand, 26129427 - 26129127
Alignment:
Q  125 aagaagttgttcctaaacaaaaggtatttccatttccacctattctaattgtattctttttgacactttaatagaattatactacaatcta-aagcatca 223  Q
    |||||||||||||||||||||||||| |||||||||| |||||||| |||| ||       ||||||||||| |||||||  |||| |||  || |||||    
T  26129427 aagaagttgttcctaaacaaaaggtacttccatttccccctattctgattgcat-------gacactttaattgaattatcatacattctttaaacatca 26129335  T
Q  224 ttttacatttaagcagggtatcgagataaacgttgaagaaggaaatacagaagctaatgccaataaaataacatcgtcaactcagttagatgtagcagat 323  Q
    |||||||| ||||||||||||| ||||||| ||||||||||||| | ||  ||||||||| || | |||| |||||||||||||    ||||||  || |    
T  26129334 ttttacatataagcagggtatccagataaatgttgaagaaggaactgcatcagctaatgctaagacaatagcatcgtcaactcatactgatgtaataggt 26129235  T
Q  324 tcatcatcaggccagttagtcacttctgtgtgtaaaacatcttcacaggtgagtttatcttatgtaaccaacttttcaaacaagtagtgttgtcatgttt 423  Q
    |||||||||||||||||||| ||||||| | |||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||| |    
T  26129234 tcatcatcaggccagttagttacttctgagcgtaaaatatcttcactggtgagtttatcgtatgtaaccaacttttcaaacaagtagtgttttcatgtgt 26129135  T
Q  424 tttattca 431  Q
    ||||||||    
T  26129134 tttattca 26129127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 126 - 431
Target Start/End: Complemental strand, 26179482 - 26179183
Alignment:
Q  126 agaagttgttcctaaacaaaaggtatttccatttccacctattctaattgtattctttttgacactttaatagaattatactacaatcta-aagcatcat 224  Q
    ||||||||||||||||||||||||| |||||||||| |||||||| |||| ||       ||||||||||| |||||||  |||| |||  || ||||||    
T  26179482 agaagttgttcctaaacaaaaggtacttccatttccccctattctgattgcat-------gacactttaattgaattatcatacattctttaaacatcat 26179390  T
Q  225 tttacatttaagcagggtatcgagataaacgttgaagaaggaaatacagaagctaatgccaataaaataacatcgtcaactcagttagatgtagcagatt 324  Q
    ||||||| ||||||||||||| ||||||| ||||||||||||| | ||  || ||||||||| | |||| |||||||||||||    ||||||  || ||    
T  26179389 tttacatataagcagggtatccagataaatgttgaagaaggaactgcatcagttaatgccaagacaatagcatcgtcaactcatactgatgtaataggtt 26179290  T
Q  325 catcatcaggccagttagtcacttctgtgtgtaaaacatcttcacaggtgagtttatcttatgtaaccaacttttcaaacaagtagtgttgtcatgtttt 424  Q
    ||||||||||||||||||| ||||||| | |||||| |||||||| |||||||||||| ||| ||||||||||||||||||||||||||| |||||| ||    
T  26179289 catcatcaggccagttagttacttctgagcgtaaaatatcttcactggtgagtttatcgtatctaaccaacttttcaaacaagtagtgttttcatgtgtt 26179190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 120 - 397
Target Start/End: Complemental strand, 26113632 - 26113352
Alignment:
Q  120 tacagaagaagttgttcctaaacaaaaggtatttccatttccacctattctaattgtattctttttgacactttaatagaattatacta--caatctaaa 217  Q
    |||| ||| |||||||| ||||||||||| ||||||||||||  ||||| | |||| |||||||| ||||||||||| |||||||||||  |||||| ||    
T  26113632 tacacaagtagttgttcttaaacaaaaggcatttccatttcccactattttgattgcattcttttcgacactttaattgaattatactatacaatcttaa 26113533  T
Q  218 gcatcattttacatttaa-gcagggtatcgagataaacgttgaagaaggaaatacagaagctaatgccaataaaataacatcgtcaactcagttagatgt 316  Q
     ||||| ||||||||||| |||||||||| | ||||| | |||||||||||||| |  ||| |||||||| |||||||||||||||||||| || ||||     
T  26113532 acatcaatttacatttaaagcagggtatccatataaatgctgaagaaggaaatatatcagccaatgccaagaaaataacatcgtcaactcatttcgatgc 26113433  T
Q  317 agcagattcatcatcaggccagttagtcacttctgtgtgtaaaacatcttcacaggtgagtttatcttatgtaaccaactt 397  Q
    || || |||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||  | | ||||||||||||    
T  26113432 agtaggttcatcatcaagccagttagttacttctgagtgtaaaacatcttcacaggtgagtttgccatttgtaaccaactt 26113352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 22 - 126
Target Start/End: Complemental strand, 26179610 - 26179506
Alignment:
Q  22 cttaaaaacatgttgcaactaatttacattttcatgcaatgcatttagctggagggccctacatcagaaataacagcagcagcaactgtgtccaccatta 121  Q
    |||||||| ||| ||||||||| |||||||||||||||||||| |||| |||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  26179610 cttaaaaatatgctgcaactaacttacattttcatgcaatgcaattagttggagggttctacatcagaaataacagcagcagcaactgtgtccaccatta 26179511  T
Q  122 cagaa 126  Q
    |||||    
T  26179510 cagaa 26179506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 35 - 126
Target Start/End: Complemental strand, 26202130 - 26202039
Alignment:
Q  35 tgcaactaatttacattttcatgcaatgcatttagctggagggccctacatcagaaataacagcagcagcaactgtgtccaccattacagaa 126  Q
    |||||||||||||||||||||||| ||||||| ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  26202130 tgcaactaatttacattttcatgctatgcattcagctggagggttctacatcagaaataacagcagcagcaactgtgtccaccattacagaa 26202039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 125 - 272
Target Start/End: Complemental strand, 26235911 - 26235772
Alignment:
Q  125 aagaagttgttcctaaacaaaaggtatttccatttccacctattctaattgtattctttttgacactttaatagaattatactacaatcta-aagcatca 223  Q
    ||||||||| |||||||||||||| |||||||||||         | ||||||||||||||||||||| ||| |||||||||||||||||  || |||||    
T  26235911 aagaagttggtcctaaacaaaaggcatttccatttc---------tgattgtattctttttgacacttaaattgaattatactacaatctttaaacatca 26235821  T
Q  224 ttttacatttaagcagggtatcgagataaacgttgaagaaggaaataca 272  Q
    |||||||||||||||||||||| ||||| | ||||||||||||||||||    
T  26235820 ttttacatttaagcagggtatccagatatatgttgaagaaggaaataca 26235772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 22 - 125
Target Start/End: Complemental strand, 26236041 - 26235935
Alignment:
Q  22 cttaaaaacatgttgcaactaatttacattttcatgcaatgcatttagctggagggccctacatcagaaataacagc---agcagcaactgtgtccacca 118  Q
    |||| ||| ||| |||||||||||||||||||||||||||||| |||| |||||||  |||||||||||||||||||   ||||||||||||||||||||    
T  26236041 cttataaatatgctgcaactaatttacattttcatgcaatgcaattagttggagggttctacatcagaaataacagcagaagcagcaactgtgtccacca 26235942  T
Q  119 ttacaga 125  Q
    |||||||    
T  26235941 ttacaga 26235935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 35 - 126
Target Start/End: Complemental strand, 26128243 - 26128152
Alignment:
Q  35 tgcaactaatttacattttcatgcaatgcatttagctggagggccctacatcagaaataacagcagcagcaactgtgtccaccattacagaa 126  Q
    |||||||||||||||||||||||| ||||| |||| | |||||  |||||||||||||||||| ||||||||||||||||||||||||||||    
T  26128243 tgcaactaatttacattttcatgctatgcaattagttagagggttctacatcagaaataacaggagcagcaactgtgtccaccattacagaa 26128152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 35 - 126
Target Start/End: Complemental strand, 26178293 - 26178202
Alignment:
Q  35 tgcaactaatttacattttcatgcaatgcatttagctggagggccctacatcagaaataacagcagcagcaactgtgtccaccattacagaa 126  Q
    |||||||||||||||||||||||| ||||| |||| | |||||  |||||||||||||||||| ||||||||||||||||||||||||||||    
T  26178293 tgcaactaatttacattttcatgctatgcaattagttagagggttctacatcagaaataacaggagcagcaactgtgtccaccattacagaa 26178202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 35 - 126
Target Start/End: Complemental strand, 26113741 - 26113650
Alignment:
Q  35 tgcaactaatttacattttcatgcaatgcatttagctggagggccctacatcagaaataacagcagcagcaactgtgtccaccattacagaa 126  Q
    ||||||||||||||||||| |||| ||||||||||| ||| ||  |||||||||||||||||| ||||||||||||| ||||||||||||||    
T  26113741 tgcaactaatttacatttttatgctatgcatttagcaggaaggttctacatcagaaataacagaagcagcaactgtgcccaccattacagaa 26113650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 35 - 126
Target Start/End: Complemental strand, 26140189 - 26140098
Alignment:
Q  35 tgcaactaatttacattttcatgcaatgcatttagctggagggccctacatcagaaataacagcagcagcaactgtgtccaccattacagaa 126  Q
    ||||||||| |||||||||||||| ||||||||||||||| ||  |||||||||||||| ||| ||||||||||||||||| ||||||||||    
T  26140189 tgcaactaaattacattttcatgctatgcatttagctggaaggttctacatcagaaatatcagaagcagcaactgtgtccatcattacagaa 26140098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 300 - 380
Target Start/End: Complemental strand, 26235771 - 26235691
Alignment:
Q  300 tcaactcagttagatgtagcagattcatcatcaggccagttagtcacttctgtgtgtaaaacatcttcacaggtgagttta 380  Q
    |||||||| ||||||||||||| |||||||||||| |||||||| ||||||| |||||||||||||||||| |||||||||    
T  26235771 tcaactcatttagatgtagcaggttcatcatcaggacagttagttacttctgagtgtaaaacatcttcacatgtgagttta 26235691  T

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Target: chr3; HSP #19
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 22 - 126
Target Start/End: Complemental strand, 26129560 - 26129450
Alignment:
Q  22 cttaaaaacatgttgcaactaatttacattttcatgcaatgcatttagctggaggg------ccctacatcagaaataacagcagcagcaactgtgtcca 115  Q
    |||||||| ||| ||||||||| |||||||||||||| ||||||||||||||||||        ||||||||||||||||||||| ||||| ||||||||    
T  26129560 cttaaaaatatgctgcaactaaattacattttcatgctatgcatttagctggagggttctatttctacatcagaaataacagcagaagcaattgtgtcca 26129461  T
Q  116 ccattacagaa 126  Q
    |||||||||||    
T  26129460 ccattacagaa 26129450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 304 - 380
Target Start/End: Complemental strand, 26209026 - 26208950
Alignment:
Q  304 ctcagttagatgtagcagattcatcatcaggccagttagtcacttctgtgtgtaaaacatcttcacaggtgagttta 380  Q
    |||| ||||||||||||| |||||||||||| |||||||| ||||||| |||||||||||||||||| |||||||||    
T  26209026 ctcatttagatgtagcaggttcatcatcaggacagttagttacttctgagtgtaaaacatcttcacatgtgagttta 26208950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 224 - 313
Target Start/End: Original strand, 26629161 - 26629250
Alignment:
Q  224 ttttacatttaagcagggtatcgagataaacgttgaagaaggaaatacagaagctaatgccaataaaataacatcgtcaactcagttaga 313  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||| |||  ||||||||||||   |||||||| ||||||||| |||||    
T  26629161 ttttaaatttaagcagggtatcgagataagcgttgaagaaggaaacacatcagctaatgccaagccaataacattgtcaactcatttaga 26629250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 200 - 272
Target Start/End: Complemental strand, 26209104 - 26209031
Alignment:
Q  200 attatactacaatcta-aagcatcattttacatttaagcagggtatcgagataaacgttgaagaaggaaataca 272  Q
    |||||||||||||||  ||  |||||||||||||||||||||||||| ||||| | ||||||||||||||||||    
T  26209104 attatactacaatctttaaatatcattttacatttaagcagggtatccagatatatgttgaagaaggaaataca 26209031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 35 - 91
Target Start/End: Original strand, 28005122 - 28005178
Alignment:
Q  35 tgcaactaatttacattttcatgcaatgcatttagctggagggccctacatcagaaa 91  Q
    |||||||||||||||||||||||| ||||| |||| |||||||| ||||||||||||    
T  28005122 tgcaactaatttacattttcatgctatgcaattagttggagggctctacatcagaaa 28005178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 201 - 272
Target Start/End: Original strand, 27979955 - 27980026
Alignment:
Q  201 ttatactacaatctaaagcatcattttacatttaagcagggtatcgagataaacgttgaagaaggaaataca 272  Q
    |||||||||||||| || |||| |||||  ||||||||||||||||||||||  ||||||||||||| ||||    
T  27979955 ttatactacaatctcaaacatccttttaattttaagcagggtatcgagataagtgttgaagaaggaactaca 27980026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 23 - 126
Target Start/End: Original strand, 28003461 - 28003564
Alignment:
Q  23 ttaaaaacatgttgcaactaatttacattttcatgcaatgcatttagctggagggccctacatcagaaataacagcagcagcaactgtgtccaccattac 122  Q
    ||||||| ||||||||| |||||||||||||||||  ||||| | || |||||||  | |||||||||| ||  | |||| ||||| ||||||||||| |    
T  28003461 ttaaaaatatgttgcaagtaatttacattttcatgttatgcaatcagttggagggttcaacatcagaaaaaaatgtagcatcaactttgtccaccatttc 28003560  T
Q  123 agaa 126  Q
    ||||    
T  28003561 agaa 28003564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 120 - 162
Target Start/End: Complemental strand, 26202021 - 26201979
Alignment:
Q  120 tacagaagaagttgttcctaaacaaaaggtatttccatttcca 162  Q
    |||| |||||||||||||||||||||||| |||||||||||||    
T  26202021 tacacaagaagttgttcctaaacaaaaggcatttccatttcca 26201979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 198 - 272
Target Start/End: Original strand, 28005313 - 28005387
Alignment:
Q  198 gaattatactacaatctaaagcatcattttacatttaagcagggtatcgagataaacgttgaagaaggaaataca 272  Q
    ||||||||||||||||| || |||| || ||  ||||||||||||||||||| ||  ||||||||||||| ||||    
T  28005313 gaattatactacaatctcaaacatccttctaattttaagcagggtatcgagaaaagtgttgaagaaggaactaca 28005387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 198 - 288
Target Start/End: Complemental strand, 8539718 - 8539628
Alignment:
Q  198 gaattatactacaatctaaagcatcattttacatttaagcagggtatcgagataaacgttgaagaaggaaatacagaagctaatgccaata 288  Q
    ||||||||||||||||  || ||| | ||||  |||||||||||| | || ||||  ||||||||||||| ||||  ||||||||||||||    
T  8539718 gaattatactacaatcctaaacattaatttaattttaagcagggtgttgaaataagtgttgaagaaggaactacatcagctaatgccaata 8539628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 56
Target Start/End: Original strand, 11420331 - 11420365
Alignment:
Q  22 cttaaaaacatgttgcaactaatttacattttcat 56  Q
    |||||||| ||||||||||||||||||||||||||    
T  11420331 cttaaaaatatgttgcaactaatttacattttcat 11420365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 198 - 296
Target Start/End: Original strand, 28149237 - 28149335
Alignment:
Q  198 gaattatactacaatctaaagcatcattttacatttaagcagggtatcgagataaacgttgaagaaggaaatacagaagctaatgccaataaaataaca 296  Q
    ||||||||||||||||| || ||||  ||||  ||||||||||||||||| ||||  | |||||||||||  ||   |||||||||||| | |||||||    
T  28149237 gaattatactacaatcttaaacatccatttaattttaagcagggtatcgaaataagtgctgaagaaggaaccacgtcagctaatgccaagacaataaca 28149335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 57
Target Start/End: Original strand, 28151203 - 28151237
Alignment:
Q  23 ttaaaaacatgttgcaactaatttacattttcatg 57  Q
    ||||||| |||||||||||||||||||||||||||    
T  28151203 ttaaaaatatgttgcaactaatttacattttcatg 28151237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 103
Target Start/End: Original strand, 19476135 - 19476216
Alignment:
Q  22 cttaaaaacatgttgcaactaatttacattttcatgcaatgcatttagctggagggccctacatcagaaataacagcagcag 103  Q
    |||||||| ||||| |||||||||||||||||| ||| ||| | |||| |||||||  |||| ||||| |  ||||||||||    
T  19476135 cttaaaaatatgttacaactaatttacattttcttgctatggaattagttggagggttctacgtcagataacacagcagcag 19476216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 74
Target Start/End: Complemental strand, 27389431 - 27389394
Alignment:
Q  37 caactaatttacattttcatgcaatgcatttagctgga 74  Q
    ||||| |||||||||||||||| |||||||||||||||    
T  27389431 caacttatttacattttcatgccatgcatttagctgga 27389394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 392
Target Start/End: Original strand, 27775753 - 27775790
Alignment:
Q  355 gtaaaacatcttcacaggtgagtttatcttatgtaacc 392  Q
    ||||||||||||||||||||||||| | ||||||||||    
T  27775753 gtaaaacatcttcacaggtgagtttgttttatgtaacc 27775790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 307
Target Start/End: Original strand, 28036914 - 28037023
Alignment:
Q  198 gaattatactacaatctaaagcatcattttacatttaagcagggtatcgagataaacgttgaagaaggaaatacagaagctaatgccaataaaataacat 297  Q
    ||||||||||||||||| || ||||  ||||  ||||||||||||||||| ||||  |||  ||||||||  |||  ||||| || ||||| ||||||||    
T  28036914 gaattatactacaatcttaaacatccatttaattttaagcagggtatcgaaataagtgttttagaaggaacaacatcagctactgacaatacaataacat 28037013  T
Q  298 cgtcaactca 307  Q
    | ||| ||||    
T  28037014 catcagctca 28037023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 91
Target Start/End: Original strand, 28036704 - 28036772
Alignment:
Q  23 ttaaaaacatgttgcaactaatttacattttcatgcaatgcatttagctggagggccctacatcagaaa 91  Q
    ||||||| ||| |||||||||||||||||||||||  ||||| | || |||||||  | ||||||||||    
T  28036704 ttaaaaatatgatgcaactaatttacattttcatgttatgcaatcagttggagggttcaacatcagaaa 28036772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 198 - 286
Target Start/End: Original strand, 28083083 - 28083171
Alignment:
Q  198 gaattatactacaatctaaagcatcattttacatttaagcagggtatcgagataaacgttgaagaaggaaatacagaagctaatgccaa 286  Q
    ||||||||||||||||| || |||| || ||  |||||||||| ||  || ||||  ||||||||||||| ||||  ||||||||||||    
T  28083083 gaattatactacaatcttaaacatctttctaattttaagcaggttagtgaaataagtgttgaagaaggaactacatcagctaatgccaa 28083171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1142 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold1142
Description:

Target: scaffold1142; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 120
Target Start/End: Original strand, 1331 - 1429
Alignment:
Q  22 cttaaaaacatgttgcaactaatttacattttcatgcaatgcatttagctggagggccctacatcagaaataacagcagcagcaactgtgtccaccatt 120  Q
    |||||||| ||| ||||||||||||||||||| |||  ||||| |||| |||||||| |  ||||||||| |  |||||  |||||| |||||||||||    
T  1331 cttaaaaatatgctgcaactaatttacatttttatggtatgcaattagttggagggctcagcatcagaaaaattagcaggtgcaactttgtccaccatt 1429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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