View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18620_high_11 (Length: 290)
Name: NF18620_high_11
Description: NF18620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18620_high_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 16 - 267
Target Start/End: Complemental strand, 39933634 - 39933383
Alignment:
| Q |
16 |
ataaaagacaaattgttttcccacccccgaataaaatnnnnnnntcaaaagtaaattttacaactgtttcaattcaattgatcagaatagtgaagtgttg |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39933634 |
ataaaagacaaattgttttcccacccccgaataaaataaaaaaatcaaaagtaaattttacaactgtttcaattcaattgatcagaatagtgaagtgttg |
39933535 |
T |
|
| Q |
116 |
gtaacaacagaaactatacataaacgatgaacaatactcattcgcaatattcgatcaaatcaaacaccatgaacaacaataacaacaacaaacccaaacc |
215 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39933534 |
gtaacaacagaaactatacataaaagatgaacaatactcattcgcaatattcgatcaaatcaaacaccatgaacaacaataacaacaacaaacccaaacc |
39933435 |
T |
|
| Q |
216 |
tcctttcatgccagcaaaggatgacaccaaacctgttcttcaagacccagta |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39933434 |
tcctttcatgccagcaaaggatgacaccaaacctgttcttcaagacccagta |
39933383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 196 - 262
Target Start/End: Original strand, 3228944 - 3229010
Alignment:
| Q |
196 |
aacaacaacaaacccaaacctcctttcatgccagcaaaggatgacaccaaacctgttcttcaagacc |
262 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
3228944 |
aacaataacaaacccaaacctgctttcatgccagcaaaggatgataccaaacctgttcttcaagacc |
3229010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 266
Target Start/End: Original strand, 3228059 - 3228106
Alignment:
| Q |
218 |
ctttcatgccagcaaaggatgacaccaaacctgttcttcaagacccagt |
266 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
3228059 |
ctttcataccagcaaaggatgataccaaacctgttctt-aagacccagt |
3228106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University