View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18620_high_3 (Length: 607)
Name: NF18620_high_3
Description: NF18620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18620_high_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 519; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 19 - 594
Target Start/End: Complemental strand, 9732281 - 9731707
Alignment:
| Q |
19 |
caaatccttctggttctccaaaacagaagtttcactcattttgcaaaatattaactgcatctgatactagcacacatggtggattttcagttctgaggaa |
118 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9732281 |
caaatccttctgattctccaaaacagaagtttcactcattttgcaaaatattaactgcatctgatactagcacacatggtggattttcagttctgaggaa |
9732182 |
T |
|
| Q |
119 |
acatgctaccgagtgcttgccgccattggtaattttcttaccgagtttctttggatgatgctatcannnnnnnnnnnncttaatttcaaatgatttttgt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
9732181 |
acatgctaccgagtgcttgccgccattggtaattttcttaccgagtttctttggatgatgctatcattttgattttt-cttaatttcaaatgatttttgt |
9732083 |
T |
|
| Q |
219 |
ttatgtatatcgtaggacatgacaccagcaactccaactcaggagctagcagcaaaggatcttcatggatttgagtggaagtttaaacacatatatagag |
318 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9732082 |
ttatgtatatcgtaggacatggcaccagcaactccaactcaggagctagcagcaaaggatcttcatggatttgagtggaagtttaaacacatatatagag |
9731983 |
T |
|
| Q |
319 |
gtaatttgtagtcttattttcattctctaattttagtgtcatattcaaattcttgaatgaatgaattctatgatttgcattgaatgagaaatggaagcga |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
9731982 |
gtaatttgtagtcttattttcattctctaattttagtgtcatattcaaattcttgaatgaatgaattctatgatttgcattgaatgagaaatggaagtga |
9731883 |
T |
|
| Q |
419 |
catggttcttatatcccttccactactgtgatcaggtcaaccgaggaggcacttgcttacaaccggctggagtacatttgtcgcatccaaaagattggtg |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9731882 |
catggttcttatatcccttccactactgtgatcaggtcaaccgaggaggcacttgcttacaaccggctggagtacatttgtcgcatccaaaagattggtg |
9731783 |
T |
|
| Q |
519 |
gccggagatgcttttgttttcctaaggtattcgcgttttgtttgtataattttcgtttctgctttcgatgttatat |
594 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9731782 |
gccggagatgcttttgttttcctaaggtattcgggttttgtttgtataattttcgtttctgctttcgatgttatat |
9731707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 124
Target Start/End: Complemental strand, 7076630 - 7076555
Alignment:
| Q |
49 |
ttcactcattttgcaaaatattaactgcatctgatactagcacacatggtggattttcagttctgaggaaacatgc |
124 |
Q |
| |
|
|||||||||| ||||| || ||||| || || |||||||| ||||||||||| || || ||||| ||||||||||| |
|
|
| T |
7076630 |
ttcactcattctgcaagatcttaaccgcttcggatactagtacacatggtggcttctctgttctcaggaaacatgc |
7076555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University