View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18620_high_5 (Length: 544)
Name: NF18620_high_5
Description: NF18620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18620_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 120 - 529
Target Start/End: Original strand, 7646166 - 7646583
Alignment:
| Q |
120 |
atatttaattttgttt-gtcctctaagttttcattgttaatttatttgtcttagtaatgnnnnnnn--tgatcatatgaatctaaattggctccttggat |
216 |
Q |
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| T |
7646166 |
atatttaatttttttttgtcctctaagttttcattgttaatttatttgtcttagtaatgaaaaaaaaatgaacatatgaatctaaattggctccttcgat |
7646265 |
T |
|
| Q |
217 |
taaaaataacacatcaattaatttatttatcgttgatgcctagcacaaatagttagtgcatgttgtaaatcatgatagcaaatttgnnnnnnnnnnnnnn |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
7646266 |
taaaaataacacatcaattaatttatttatcgttgatgcctagcacaaatagttagtgcatgttgtaaatcatgatagcgaatttgtttttttttttttt |
7646365 |
T |
|
| Q |
317 |
----aataagagaaattgaagaagttaaaaacaaacacgataaa-ccattccctaataggatagtaaactgataaatcaatcacatgaagattataaatt |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7646366 |
ttttaataagagaaattgaagaagttaaaaacaaacacgataaaaccattccctaataggatagtaaactgataaatcaatcacatgaagattataaatt |
7646465 |
T |
|
| Q |
412 |
acgtgatttgagctcacccatgttcagtagtttcctttttctcactactagacttttgttgagccttgtccatcttatgtgaagaatcagctttggagca |
511 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
7646466 |
acgtgatttgagctcacccatgttcagtagtttcctttttctcactactagacttttgttgagccttgtccatcttatgtgcagaatcagctttggagca |
7646565 |
T |
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| Q |
512 |
aaatctaacggtggaagt |
529 |
Q |
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| T |
7646566 |
aaatctaacggtggaagt |
7646583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 7646050 - 7646081
Alignment:
| Q |
1 |
cttcacaatattaatccatctcagaacacata |
32 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
7646050 |
cttcacaatattaatccatctcagaacacata |
7646081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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