View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18620_high_7 (Length: 331)

Name: NF18620_high_7
Description: NF18620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18620_high_7
NF18620_high_7
[»] chr3 (15 HSPs)
chr3 (17-115)||(50386130-50386228)
chr3 (17-115)||(497689-497787)
chr3 (43-112)||(7147179-7147248)
chr3 (43-112)||(22418844-22418913)
chr3 (34-112)||(27237346-27237424)
chr3 (43-112)||(43055292-43055361)
chr3 (43-112)||(49430482-49430551)
chr3 (36-115)||(3541693-3541772)
chr3 (48-112)||(40154756-40154820)
chr3 (60-119)||(36617921-36617980)
chr3 (47-108)||(51837497-51837558)
chr3 (60-112)||(25070855-25070907)
chr3 (60-112)||(26557630-26557682)
chr3 (60-112)||(26903067-26903119)
chr3 (60-112)||(28210883-28210935)
[»] chr1 (10 HSPs)
chr1 (17-115)||(38741278-38741376)
chr1 (17-115)||(2123579-2123677)
chr1 (17-115)||(50158883-50158981)
chr1 (17-113)||(33403728-33403824)
chr1 (25-112)||(11943668-11943755)
chr1 (27-112)||(32942269-32942354)
chr1 (43-112)||(37188202-37188271)
chr1 (77-117)||(18431237-18431277)
chr1 (77-112)||(5458623-5458658)
chr1 (60-112)||(22787427-22787479)
[»] chr7 (14 HSPs)
chr7 (17-113)||(46912926-46913022)
chr7 (27-114)||(46357783-46357870)
chr7 (25-112)||(36616868-36616955)
chr7 (45-112)||(42896852-42896919)
chr7 (25-105)||(18104496-18104576)
chr7 (45-108)||(4519742-4519805)
chr7 (43-112)||(46457683-46457752)
chr7 (27-111)||(33081854-33081938)
chr7 (47-110)||(5848787-5848850)
chr7 (43-108)||(28998311-28998376)
chr7 (27-102)||(31670593-31670668)
chr7 (45-111)||(43998120-43998186)
chr7 (43-110)||(23041601-23041670)
chr7 (60-112)||(38663350-38663402)
[»] chr5 (14 HSPs)
chr5 (17-124)||(3059263-3059370)
chr5 (17-115)||(25981430-25981528)
chr5 (17-115)||(34225969-34226067)
chr5 (27-111)||(26326961-26327045)
chr5 (26-112)||(33727426-33727512)
chr5 (26-112)||(33798705-33798791)
chr5 (27-100)||(11773293-11773366)
chr5 (65-115)||(14395786-14395836)
chr5 (27-112)||(13475557-13475642)
chr5 (43-112)||(971737-971806)
chr5 (55-100)||(39421297-39421342)
chr5 (60-112)||(423989-424041)
chr5 (53-85)||(2197647-2197679)
chr5 (60-112)||(9047491-9047543)
[»] chr4 (10 HSPs)
chr4 (17-116)||(2917616-2917715)
chr4 (260-321)||(24272499-24272564)
chr4 (43-112)||(4940061-4940130)
chr4 (43-112)||(15545053-15545122)
chr4 (27-112)||(47286607-47286692)
chr4 (51-117)||(53238464-53238530)
chr4 (47-103)||(26736571-26736627)
chr4 (62-108)||(42110021-42110067)
chr4 (27-100)||(18764660-18764733)
chr4 (61-102)||(35390408-35390449)
[»] chr2 (3 HSPs)
chr2 (17-115)||(918001-918099)
chr2 (45-115)||(41911797-41911867)
chr2 (42-100)||(9929322-9929380)
[»] chr8 (8 HSPs)
chr8 (17-115)||(29246832-29246930)
chr8 (27-102)||(35702120-35702195)
chr8 (38-109)||(14443048-14443119)
chr8 (43-112)||(11920631-11920700)
chr8 (33-112)||(7351396-7351475)
chr8 (26-108)||(5548508-5548592)
chr8 (59-112)||(16428095-16428148)
chr8 (60-112)||(45486339-45486391)
[»] chr6 (6 HSPs)
chr6 (25-117)||(595721-595813)
chr6 (43-112)||(6174377-6174446)
chr6 (24-112)||(843636-843724)
chr6 (27-110)||(13850731-13850814)
chr6 (60-112)||(16693593-16693645)
chr6 (60-117)||(18816824-18816881)


Alignment Details
Target: chr3 (Bit Score: 83; Significance: 3e-39; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 17 - 115
Target Start/End: Original strand, 50386130 - 50386228
Alignment:
Q  17 atctataacatttaatgtatcaatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgcccatg 115  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  50386130 atctatagcatttaaggtatcaatgttttactttgttaatatatatagttgctttgaaagttttgccacaccaatatcaaatgtctagatccgcccatg 50386228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 17 - 115
Target Start/End: Complemental strand, 497787 - 497689
Alignment:
Q  17 atctataacatttaatgtatcaatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgcccatg 115  Q
    ||||||| ||||||| |||| |||||||||||||||||||||||||| ||  ||||||||||||||||||||||||||| |||||||||||||||||||    
T  497787 atctatagcatttaaggtattaatgttttactttgttaatatatatagttgatttgaaagttttgccacaccaatatcatatgtctagatccgcccatg 497689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 43 - 112
Target Start/End: Complemental strand, 7147248 - 7147179
Alignment:
Q  43 tttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 112  Q
    |||| |||||||||||||||| |||||||| || |||||||||||||||||||| |||||||||||||||    
T  7147248 tttattttgttaatatatatagtttctttgcaaattttgccacaccaatatcaactgtctagatccgccc 7147179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 43 - 112
Target Start/End: Original strand, 22418844 - 22418913
Alignment:
Q  43 tttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 112  Q
    ||||||||||||||||||||| || ||||| || |||||||||||||||||||| ||||| |||||||||    
T  22418844 tttactttgttaatatatatagttgctttgcaaattttgccacaccaatatcaattgtctggatccgccc 22418913  T

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Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 34 - 112
Target Start/End: Complemental strand, 27237424 - 27237346
Alignment:
Q  34 tatcaatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 112  Q
    |||||||  ||||||||||||||| ||||| ||  ||||||  |||||||||||||||||||||||||| |||||||||    
T  27237424 tatcaattatttactttgttaataaatatagttgatttgaatattttgccacaccaatatcaaatgtctggatccgccc 27237346  T

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Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 43 - 112
Target Start/End: Complemental strand, 43055361 - 43055292
Alignment:
Q  43 tttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 112  Q
    |||| ||| |||||||||||| |||||||| || |||||||||||||||||||| | |||||||||||||    
T  43055361 tttaatttattaatatatatagtttctttgcaaattttgccacaccaatatcaactctctagatccgccc 43055292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 43 - 112
Target Start/End: Complemental strand, 49430551 - 49430482
Alignment:
Q  43 tttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 112  Q
    ||||||||||||||||||||| |||||||  || ||||| |||||||||||||| | |||||||||||||    
T  49430551 tttactttgttaatatatatagtttctttacaaattttgtcacaccaatatcaactctctagatccgccc 49430482  T

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Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 36 - 115
Target Start/End: Complemental strand, 3541772 - 3541693
Alignment:
Q  36 tcaatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgcccatg 115  Q
    |||||| || ||||| |||||||||||| || |||||||| ||||| ||||||||||||||||||||  ||||| |||||    
T  3541772 tcaatgcttcactttattaatatatatagttactttgaaaattttgtcacaccaatatcaaatgtctgcatccgtccatg 3541693  T

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Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 48 - 112
Target Start/End: Complemental strand, 40154820 - 40154756
Alignment:
Q  48 tttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 112  Q
    |||||||||||||||| ||||||||| | ||| ||||||| ||||||||| |||||| |||||||    
T  40154820 tttgttaatatatatagtttctttgatattttagccacactaatatcaaaagtctaggtccgccc 40154756  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 60 - 119
Target Start/End: Original strand, 36617921 - 36617980
Alignment:
Q  60 tataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgcccatgaatg 119  Q
    |||| ||||||| ||| ||||||||||| |||||  ||||||||||||||||| ||||||    
T  36617921 tatagtttctttaaaaattttgccacactaatatgcaatgtctagatccgcccctgaatg 36617980  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 108
Target Start/End: Complemental strand, 51837558 - 51837497
Alignment:
Q  47 ctttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatcc 108  Q
    |||||||||||||||| |||||||||| | |||  ||| | |||||||||| ||||||||||    
T  51837558 ctttgttaatatatattatttctttgatattttatccaaatcaatatcaaaagtctagatcc 51837497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 112
Target Start/End: Original strand, 25070855 - 25070907
Alignment:
Q  60 tataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 112  Q
    |||| ||||||| ||| ||||||||||| |||||  |||||||||||||||||    
T  25070855 tatagtttctttaaaaattttgccacactaatatgcaatgtctagatccgccc 25070907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 112
Target Start/End: Original strand, 26557630 - 26557682
Alignment:
Q  60 tataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 112  Q
    |||| ||||||| ||| ||||||||||| ||||| | ||||||||||||||||    
T  26557630 tatagtttctttaaaaattttgccacactaatatgacatgtctagatccgccc 26557682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 112
Target Start/End: Complemental strand, 26903119 - 26903067
Alignment:
Q  60 tataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 112  Q
    |||| ||||||| ||| ||||||||||| |||||  |||||||||||||||||    
T  26903119 tatagtttctttaaaaattttgccacactaatatgcaatgtctagatccgccc 26903067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 112
Target Start/End: Complemental strand, 28210935 - 28210883
Alignment:
Q  60 tataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 112  Q
    |||| ||||||| ||| ||||||||||| |||||  |||||||||||||||||    
T  28210935 tatagtttctttaaaaattttgccacactaatatgcaatgtctagatccgccc 28210883  T

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Target: chr1 (Bit Score: 83; Significance: 3e-39; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 17 - 115
Target Start/End: Original strand, 38741278 - 38741376
Alignment:
Q  17 atctataacatttaatgtatcaatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgcccatg 115  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  38741278 atctatagcatttaaggtatcaatgttttactttgttaatatatatagttgctttgaaagttttgccacaccaatatcaaatgtctagatccgcccatg 38741376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 17 - 115
Target Start/End: Complemental strand, 2123677 - 2123579
Alignment:
Q  17 atctataacatttaatgtatcaatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgcccatg 115  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||    
T  2123677 atctatagcatttaaggtatcaatgttttactttgttaatatatatagttgctttgaaagttttgtcacaccaatatcaaatgtctagatccgcccatg 2123579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 17 - 115
Target Start/End: Original strand, 50158883 - 50158981
Alignment:
Q  17 atctataacatttaatgtatcaatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgcccatg 115  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||  || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  50158883 atctatagcatttaaggtatcaatgttttactttgttaatatatatggttgctttgaaagttttgccacaccaatatcaaatgtctagatccgcccatg 50158981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 17 - 113
Target Start/End: Original strand, 33403728 - 33403824
Alignment:
Q  17 atctataacatttaatgtatcaatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccca 113  Q
    ||||||| ||||||| ||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||    
T  33403728 atctatagcatttaaggtaacaatgttttactttgttaatatatatagttgctttgaaagttttgccacaccaatatcaaatgtctagatccgccca 33403824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 25 - 112
Target Start/End: Complemental strand, 11943755 - 11943668
Alignment:
Q  25 catttaatgtatcaatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 112  Q
    ||||||| || |||||||||||||||||||||||||||| ||| ||||||| ||||||||||| ||||||||||||||||||||||||    
T  11943755 catttaaggtgtcaatgttttactttgttaatatatatagtttgtttgaaaattttgccacactaatatcaaatgtctagatccgccc 11943668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 27 - 112
Target Start/End: Original strand, 32942269 - 32942354
Alignment:
Q  27 tttaatgtatcaatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 112  Q
    ||||| ||||||||  ||||||||||||||| ||||| ||  ||||||  |||||||||||||||||||||||||| |||||||||    
T  32942269 tttaaggtatcaattatttactttgttaataaatatagttgatttgaatattttgccacaccaatatcaaatgtctggatccgccc 32942354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 43 - 112
Target Start/End: Original strand, 37188202 - 37188271
Alignment:
Q  43 tttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 112  Q
    ||||||||||||||||||||| || ||||| || |||||||||||||||||||| ||||| |||||||||    
T  37188202 tttactttgttaatatatatagttgctttgcaaattttgccacaccaatatcaattgtctggatccgccc 37188271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 117
Target Start/End: Complemental strand, 18431277 - 18431237
Alignment:
Q  77 ttttgccacaccaatatcaaatgtctagatccgcccatgaa 117  Q
    ||||||||||| ||||| |||||||||||||||||||||||    
T  18431277 ttttgccacactaatatgaaatgtctagatccgcccatgaa 18431237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 77 - 112
Target Start/End: Complemental strand, 5458658 - 5458623
Alignment:
Q  77 ttttgccacaccaatatcaaatgtctagatccgccc 112  Q
    ||||||||||||||||||||||||||| ||||||||    
T  5458658 ttttgccacaccaatatcaaatgtctacatccgccc 5458623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 112
Target Start/End: Complemental strand, 22787479 - 22787427
Alignment:
Q  60 tataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 112  Q
    |||| ||||||| ||| ||||||||||| ||||| | ||||||||||||||||    
T  22787479 tatagtttctttaaaaattttgccacactaatatgacatgtctagatccgccc 22787427  T

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Target: chr7 (Bit Score: 81; Significance: 4e-38; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 17 - 113
Target Start/End: Complemental strand, 46913022 - 46912926
Alignment:
Q  17 atctataacatttaatgtatcaatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccca 113  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||    
T  46913022 atctatagcatttaaggtatcaatgttttactttgttaatatatatagttgctttgaaagttttgccacaccaatatcaaatgtctagatccgccca 46912926  T

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Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 27 - 114
Target Start/End: Complemental strand, 46357870 - 46357783
Alignment:
Q  27 tttaatgtatcaatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgcccat 114  Q
    ||||| || |||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46357870 tttaaagtgtcaatggtctactttgttaatatatatagtttctttgaaagttttgccacaccaatatcaaatgtctagatccgcccat 46357783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 25 - 112
Target Start/End: Complemental strand, 36616955 - 36616868
Alignment:
Q  25 catttaatgtatcaatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 112  Q
    ||||||| |||  |||||||||||||||||||||||||| ||| ||||||| |||| |||||||||||||||||||||||||||||||    
T  36616955 catttaaggtaagaatgttttactttgttaatatatatagtttgtttgaaaattttaccacaccaatatcaaatgtctagatccgccc 36616868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 45 - 112
Target Start/End: Complemental strand, 42896919 - 42896852
Alignment:
Q  45 tactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 112  Q
    ||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  42896919 tactttgttaatatatatagtttttttaaaagttttgccacaccaatatcaaatgtctagatccgccc 42896852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 25 - 105
Target Start/End: Original strand, 18104496 - 18104576
Alignment:
Q  25 catttaatgtatcaatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctaga 105  Q
    |||||||||||||||||| ||||||| |||||||||||| ||| ||| ||| ||||| |||||||||||||||||||||||    
T  18104496 catttaatgtatcaatgtgttactttattaatatatatagtttgtttcaaaattttgtcacaccaatatcaaatgtctaga 18104576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 45 - 108
Target Start/End: Original strand, 4519742 - 4519805
Alignment:
Q  45 tactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatcc 108  Q
    ||||||||||||||||||| || ||||| |||||||| ||||||||||||||||||||||||||    
T  4519742 tactttgttaatatatatagttgctttgcaagttttgtcacaccaatatcaaatgtctagatcc 4519805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 43 - 112
Target Start/End: Complemental strand, 46457752 - 46457683
Alignment:
Q  43 tttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 112  Q
    ||||||||||||||||||||| || ||||| || |||||||||||||||||||| ||||| |||||||||    
T  46457752 tttactttgttaatatatatagttactttgcaaattttgccacaccaatatcaactgtctggatccgccc 46457683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 27 - 111
Target Start/End: Original strand, 33081854 - 33081938
Alignment:
Q  27 tttaatgtatcaatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgcc 111  Q
    ||||| ||||||||  ||||||||||||||| ||||| ||  ||||||  |||||||||||||||||||||||||| ||||||||    
T  33081854 tttaaggtatcaattatttactttgttaataaatatagttgatttgaatattttgccacaccaatatcaaatgtctggatccgcc 33081938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 47 - 110
Target Start/End: Original strand, 5848787 - 5848850
Alignment:
Q  47 ctttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgc 110  Q
    ||||||||||||||||||||| ||||| | ||| | ||||||||||||||| ||||||||||||    
T  5848787 ctttgttaatatatataatttatttgatattttagtcacaccaatatcaaaagtctagatccgc 5848850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 108
Target Start/End: Original strand, 28998311 - 28998376
Alignment:
Q  43 tttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatcc 108  Q
    ||||||||||||||||||||| || ||||| || |||||||| ||||||||||| ||||| |||||    
T  28998311 tttactttgttaatatatatagttgctttgcaaattttgccataccaatatcaattgtctggatcc 28998376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 102
Target Start/End: Original strand, 31670593 - 31670668
Alignment:
Q  27 tttaatgtatcaatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtct 102  Q
    ||||| || ||||| |||||||||||||||||||||| ||  |||| || ||||  ||||||||||||||||||||    
T  31670593 tttaaggtgtcaatattttactttgttaatatatatagttgttttggaaattttatcacaccaatatcaaatgtct 31670668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 111
Target Start/End: Complemental strand, 43998186 - 43998120
Alignment:
Q  45 tactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgcc 111  Q
    ||||||||||||||||||| || ||||| || ||||| |||||||||||||| | ||| ||||||||    
T  43998186 tactttgttaatatatatagttactttgcaaattttgtcacaccaatatcaactctctggatccgcc 43998120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 110
Target Start/End: Complemental strand, 23041670 - 23041601
Alignment:
Q  43 tttactttgttaatatatataa--tttctttgaaagttttgccacaccaatatcaaatgtctagatccgc 110  Q
    |||||||||||||||||||||   || ||||  || |||||||||||||||||||| ||||| |||||||    
T  23041670 tttactttgttaatatatatatagttgcttttcaaattttgccacaccaatatcaactgtctggatccgc 23041601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 112
Target Start/End: Original strand, 38663350 - 38663402
Alignment:
Q  60 tataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 112  Q
    |||| ||||||| ||| ||||||||||| |||||  |||||||||||||||||    
T  38663350 tatagtttctttaaaaattttgccacactaatatgcaatgtctagatccgccc 38663402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 17 - 124
Target Start/End: Original strand, 3059263 - 3059370
Alignment:
Q  17 atctataacatttaatgtatcaatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgcccatga 116  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||     
T  3059263 atctatagcatttaaggtatcaatgttttactttgttaatatatatagttactttgaaagttttgccacaccaatatcaaatgtctagatccacccatgg 3059362  T
Q  117 atggagag 124  Q
    ||| ||||    
T  3059363 atgtagag 3059370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 17 - 115
Target Start/End: Original strand, 25981430 - 25981528
Alignment:
Q  17 atctataacatttaatgtatcaatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgcccatg 115  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  25981430 atctatagcatttaaggtatcaatgttttactttgttaatatatatagttgctttgaaagttttgccacaccaatatcgaatgtctagatccgcccatg 25981528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 17 - 115
Target Start/End: Original strand, 34225969 - 34226067
Alignment:
Q  17 atctataacatttaatgtatcaatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgcccatg 115  Q
    |||||||||||||||  |||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  34225969 atctataacatttaagttatcaaagttttactttgttaatatatatagttgctttgaaagttttgccacaccaatatcaaatgtctagatccgcccatg 34226067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 27 - 111
Target Start/End: Original strand, 26326961 - 26327045
Alignment:
Q  27 tttaatgtatcaatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgcc 111  Q
    ||||| || |||||||| ||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||    
T  26326961 tttaaagtgtcaatgttctactttgttaatatacatagtttctttgaaagttttgctacaccaatatcaaatgtctagatccgcc 26327045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 26 - 112
Target Start/End: Original strand, 33727426 - 33727512
Alignment:
Q  26 atttaatgtatcaatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 112  Q
    |||||| || |||||| | ||||||||||||||||||| ||  |||||||||||| ||| |||||||||||||||||||||||||||    
T  33727426 atttaaagtgtcaatggtctactttgttaatatatatagttattttgaaagttttaccaaaccaatatcaaatgtctagatccgccc 33727512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 26 - 112
Target Start/End: Original strand, 33798705 - 33798791
Alignment:
Q  26 atttaatgtatcaatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 112  Q
    |||||| || |||||| | ||||||||||||| ||||| ||  |||||||||||||||| |||||||||||||||||||||||||||    
T  33798705 atttaaagtgtcaatggtctactttgttaatacatatagttgttttgaaagttttgccaaaccaatatcaaatgtctagatccgccc 33798791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 27 - 100
Target Start/End: Original strand, 11773293 - 11773366
Alignment:
Q  27 tttaatgtatcaatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgt 100  Q
    ||||| ||||||||| |||||||| ||||||||||||||| |||||||| |||||||||||||| |||||||||    
T  11773293 tttaaggtatcaatgctttactttattaatatatataattgctttgaaaattttgccacaccaaaatcaaatgt 11773366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 65 - 115
Target Start/End: Complemental strand, 14395836 - 14395786
Alignment:
Q  65 tttctttgaaagttttgccacaccaatatcaaatgtctagatccgcccatg 115  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  14395836 tttctttgaaagttttgccgcaccaatatcaaatgtctagatccgcccatg 14395786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 27 - 112
Target Start/End: Complemental strand, 13475642 - 13475557
Alignment:
Q  27 tttaatgtatcaatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 112  Q
    ||||| ||||||||  ||||||||||||||| ||||| ||  ||||||  |||||||||||||||||||||||||| |||||||||    
T  13475642 tttaaggtatcaattatttactttgttaataaatatagttgatttgaatattttgccacaccaatatcaaatgtctggatccgccc 13475557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 112
Target Start/End: Complemental strand, 971806 - 971737
Alignment:
Q  43 tttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 112  Q
    ||||||||||||||| ||||| ||  |||||| |||||||||||| | |||||||||||| |||||||||    
T  971806 tttactttgttaataaatatagttgatttgaatgttttgccacactattatcaaatgtctggatccgccc 971737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 55 - 100
Target Start/End: Original strand, 39421297 - 39421342
Alignment:
Q  55 atatatataatttctttgaaagttttgccacaccaatatcaaatgt 100  Q
    ||||||||| || |||||||||||||||||||||||||||||||||    
T  39421297 atatatatagttgctttgaaagttttgccacaccaatatcaaatgt 39421342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 112
Target Start/End: Complemental strand, 424041 - 423989
Alignment:
Q  60 tataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 112  Q
    |||| ||||||| |||  |||||||||| ||||| ||||||||||||||||||    
T  424041 tatagtttctttaaaaaatttgccacactaatatgaaatgtctagatccgccc 423989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 85
Target Start/End: Original strand, 2197647 - 2197679
Alignment:
Q  53 taatatatataatttctttgaaagttttgccac 85  Q
    ||||||||||| |||||||||||||||||||||    
T  2197647 taatatatatagtttctttgaaagttttgccac 2197679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 112
Target Start/End: Complemental strand, 9047543 - 9047491
Alignment:
Q  60 tataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 112  Q
    |||| ||||||| |||  |||||||||| ||||| ||||||||||||||||||    
T  9047543 tatagtttctttaaaaaatttgccacactaatatgaaatgtctagatccgccc 9047491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 17 - 116
Target Start/End: Complemental strand, 2917715 - 2917616
Alignment:
Q  17 atctataacatttaatgtatcaatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgcccatga 116  Q
    ||||||| |||||||  |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2917715 atctatagcatttaagatatcaatgttttactttgttaatatatatagttgctttgaaagttttgccacaccaatatcaaatgtctagatccgcccatga 2917616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 260 - 321
Target Start/End: Complemental strand, 24272564 - 24272499
Alignment:
Q  260 ttgtaaatttgttccacattatgaaatattaaatcggct----taccaggtgttatttgatgatgt 321  Q
    |||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||    
T  24272564 ttgtaaatttgttccacattatgaaatattaaatcggcttacgtaccaggtgttatttgatgatgt 24272499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 43 - 112
Target Start/End: Original strand, 4940061 - 4940130
Alignment:
Q  43 tttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 112  Q
    ||||||||||||||||||||| || ||||| || |||||||||||||||||||| | |||||||||||||    
T  4940061 tttactttgttaatatatatagttcctttgcaaattttgccacaccaatatcaactctctagatccgccc 4940130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 43 - 112
Target Start/End: Original strand, 15545053 - 15545122
Alignment:
Q  43 tttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 112  Q
    ||||||||||||||||||||| || ||||| || |||||||||||||||||||| ||||| |||||||||    
T  15545053 tttactttgttaatatatatagttgctttgcaaattttgccacaccaatatcaactgtctggatccgccc 15545122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 27 - 112
Target Start/End: Complemental strand, 47286692 - 47286607
Alignment:
Q  27 tttaatgtatcaatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 112  Q
    ||||| ||||||||  ||||||||||||||| ||||| ||  ||||||  |||||||||||||||||||||||||| |||||||||    
T  47286692 tttaaggtatcaattatttactttgttaataaatatagttgatttgaatattttgccacaccaatatcaaatgtctggatccgccc 47286607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 117
Target Start/End: Original strand, 53238464 - 53238530
Alignment:
Q  51 gttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgcccatgaa 117  Q
    ||||||||||||| ||||||||| | ||| | |||||||||||| || |||||||||||| ||||||    
T  53238464 gttaatatatatagtttctttgatattttagtcacaccaatatcgaaagtctagatccgcacatgaa 53238530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 103
Target Start/End: Original strand, 26736571 - 26736627
Alignment:
Q  47 ctttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtcta 103  Q
    |||| |||||||||||| ||||||||| | ||| ||||||||||||||||| |||||    
T  26736571 ctttattaatatatatagtttctttgatattttagccacaccaatatcaaaagtcta 26736627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 108
Target Start/End: Complemental strand, 42110067 - 42110021
Alignment:
Q  62 taatttctttgaaagttttgccacaccaatatcaaatgtctagatcc 108  Q
    ||||| ||||||||||||||  ||||||||||||||||| |||||||    
T  42110067 taattactttgaaagttttgttacaccaatatcaaatgtatagatcc 42110021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 100
Target Start/End: Complemental strand, 18764733 - 18764660
Alignment:
Q  27 tttaatgtatcaatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgt 100  Q
    ||||| ||||||||  ||||||||||||||||||||| || |||| | ||||||| || | |||||| ||||||    
T  18764733 tttaaggtatcaatactttactttgttaatatatatagttactttaacagttttgtcagatcaatattaaatgt 18764660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 102
Target Start/End: Complemental strand, 35390449 - 35390408
Alignment:
Q  61 ataatttctttgaaagttttgccacaccaatatcaaatgtct 102  Q
    ||||||||||||||| ||| ||||||| ||||||||||||||    
T  35390449 ataatttctttgaaattttagccacactaatatcaaatgtct 35390408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 7e-37; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 17 - 115
Target Start/End: Original strand, 918001 - 918099
Alignment:
Q  17 atctataacatttaatgtatcaatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgcccatg 115  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  918001 atctatagcatttaaggtatcaatgttttactttgttaatatatatagttgctttgaaagttttgccacaccaatatcaaatgtttagatccgcccatg 918099  T

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Target: chr2; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 45 - 115
Target Start/End: Original strand, 41911797 - 41911867
Alignment:
Q  45 tactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgcccatg 115  Q
    ||||||||||||||||||  || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  41911797 tactttgttaatatatattgttgctttgaaagttttgccacaccaatatcaaatgtctagatccgcccatg 41911867  T

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Target: chr2; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 42 - 100
Target Start/End: Original strand, 9929322 - 9929380
Alignment:
Q  42 ttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgt 100  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  9929322 ttttactttgttaatatatatattttctttgaaagttttgccacaccaaaatcaaatgt 9929380  T

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Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 17 - 115
Target Start/End: Complemental strand, 29246930 - 29246832
Alignment:
Q  17 atctataacatttaatgtatcaatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgcccatg 115  Q
    ||||||| ||||||| ||||||||||| ||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  29246930 atctatagcatttaaggtatcaatgttatactttgttaatatatatagttgctttgaaagttttgccacatcaatatcaaatgtctagatccgcccatg 29246832  T

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Target: chr8; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 27 - 102
Target Start/End: Original strand, 35702120 - 35702195
Alignment:
Q  27 tttaatgtatcaatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtct 102  Q
    ||||| || |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  35702120 tttaaggtgtcaatgttttactttgttaatatatatagtttctttgaaagttttgccacaccaatatcaaatgtct 35702195  T

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Target: chr8; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 38 - 109
Target Start/End: Original strand, 14443048 - 14443119
Alignment:
Q  38 aatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccg 109  Q
    |||| ||||||||||||||||||||| || ||||| || |||||||||||||||||||| ||||| ||||||    
T  14443048 aatgctttactttgttaatatatatagttactttgcaaattttgccacaccaatatcaactgtctggatccg 14443119  T

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Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 43 - 112
Target Start/End: Complemental strand, 11920700 - 11920631
Alignment:
Q  43 tttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 112  Q
    ||||| ||||||||||||||| |||||||| || ||| |||||||||||||||| | |||||||||||||    
T  11920700 tttacgttgttaatatatatagtttctttgcaaatttcgccacaccaatatcaactctctagatccgccc 11920631  T

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Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 112
Target Start/End: Complemental strand, 7351475 - 7351396
Alignment:
Q  33 gtatcaatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 112  Q
    ||||||||  ||||||||||||||| ||||| ||  ||| ||  |||||||||||||||||||||||||| |||||||||    
T  7351475 gtatcaattatttactttgttaataaatatagttgatttaaatattttgccacaccaatatcaaatgtctggatccgccc 7351396  T

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Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 108
Target Start/End: Original strand, 5548508 - 5548592
Alignment:
Q  26 atttaatgtatcaatgttttactttgttaatatatat--aatttctttgaaagttttgccacaccaatatcaaatgtctagatcc 108  Q
    |||||| ||||||| | | |||||| |||||||||||  | ||||||||||||||||||||||| || ||||||||| |||||||    
T  5548508 atttaaagtatcaacgatctactttattaatatatatttagtttctttgaaagttttgccacactaacatcaaatgtttagatcc 5548592  T

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Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 112
Target Start/End: Complemental strand, 16428148 - 16428095
Alignment:
Q  59 atataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 112  Q
    ||||| ||| |||||||||||||||||| ||||||||||||||| |||||||||    
T  16428148 atatagtttatttgaaagttttgccacatcaatatcaaatgtctggatccgccc 16428095  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 112
Target Start/End: Original strand, 45486339 - 45486391
Alignment:
Q  60 tataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 112  Q
    |||| ||||||| ||| ||||||||||| |||||  |||||||||||||||||    
T  45486339 tatagtttctttaaaaattttgccacactaatatgcaatgtctagatccgccc 45486391  T

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Target: chr6 (Bit Score: 61; Significance: 4e-26; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 25 - 117
Target Start/End: Original strand, 595721 - 595813
Alignment:
Q  25 catttaatgtatcaatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgcccatgaa 117  Q
    |||||||  |||||||||||||||||||||||||||||| ||| ||||||| ||||||||||| |||||||||||||||||||| ||| ||||    
T  595721 catttaagatatcaatgttttactttgttaatatatatagtttgtttgaaaattttgccacactaatatcaaatgtctagatccacccctgaa 595813  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 43 - 112
Target Start/End: Complemental strand, 6174446 - 6174377
Alignment:
Q  43 tttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 112  Q
    ||||||||||||||||||||| || ||||| || |||||||||||||||||||| ||||| |||||||||    
T  6174446 tttactttgttaatatatatagttgctttgcaaattttgccacaccaatatcaactgtctggatccgccc 6174377  T

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Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 24 - 112
Target Start/End: Original strand, 843636 - 843724
Alignment:
Q  24 acatttaatgtatcaatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 112  Q
    |||||||| || |||||| | |||||| |||||||||||| ||  ||| ||||||||| |||||||||||||||||| |||||||||||    
T  843636 acatttaaagtgtcaatggtctactttattaatatatatagttgttttaaaagttttgtcacaccaatatcaaatgtttagatccgccc 843724  T

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Target: chr6; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 27 - 110
Target Start/End: Original strand, 13850731 - 13850814
Alignment:
Q  27 tttaatgtatcaatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgc 110  Q
    ||||| ||||||||  ||||||||||||||| ||||| ||  ||||||  |||||||||||||||||||||||||| |||||||    
T  13850731 tttaaggtatcaattatttactttgttaataaatatagttgatttgaatattttgccacaccaatatcaaatgtctggatccgc 13850814  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 112
Target Start/End: Original strand, 16693593 - 16693645
Alignment:
Q  60 tataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 112  Q
    |||| ||||||| ||| ||||||||||| ||||| ||||||||||||||||||    
T  16693593 tatagtttctttaaaaattttgccacactaatatgaaatgtctagatccgccc 16693645  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 117
Target Start/End: Complemental strand, 18816881 - 18816824
Alignment:
Q  60 tataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgcccatgaa 117  Q
    |||| ||||||| ||| ||||||||||| |||||  ||||||||||||||||| ||||    
T  18816881 tatagtttctttaaaaattttgccacactaatatgcaatgtctagatccgcccctgaa 18816824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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