View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18620_high_9 (Length: 326)
Name: NF18620_high_9
Description: NF18620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18620_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 176; Significance: 8e-95; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 68 - 258
Target Start/End: Complemental strand, 39933298 - 39933110
Alignment:
| Q |
68 |
tcatctgtgacagatactgaggtctgatccaatagaaacagaggaagctgtgttgctattacctccattctcaatccccaactcaacttctccatctcaa |
167 |
Q |
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| T |
39933298 |
tcatctgtgacagatactgaggtctgatccaattgaaacagaggaagctgtgttgctattacctccattctcaatccccaactcaacttctccatctcaa |
39933199 |
T |
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| Q |
168 |
atgacctaattgtatatttcattttgaaacttctaaccactctatgcccatgttaaatatttgtttcttctttctgttttagacaatggaa |
258 |
Q |
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| T |
39933198 |
atgacctaattgtatatttcattttgaaacttctaaccactctatgcccatgttaaatatttgtttcttc--tctgttttagacaatggaa |
39933110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 308
Target Start/End: Complemental strand, 39933088 - 39933059
Alignment:
| Q |
279 |
agctcttcactcagaaacctatctcttaaa |
308 |
Q |
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| T |
39933088 |
agctcttcactcagaaacctatctcttaaa |
39933059 |
T |
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