View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18620_low_15 (Length: 278)
Name: NF18620_low_15
Description: NF18620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18620_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 48 - 268
Target Start/End: Complemental strand, 45762452 - 45762232
Alignment:
| Q |
48 |
ttgatttgaatctcttacgttaaggaagaaggaccaagcaatggattctccctaaaaggctgaaaagagaacctgtgaagaaacctagcaacacaatgat |
147 |
Q |
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| T |
45762452 |
ttgatttgaatctcttacgttaaggaagaaggaccaagcaatggattctccctaaaaggctgaaaagagaacctgtgaagaaacctagcaacacaatgat |
45762353 |
T |
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| Q |
148 |
gatgatgtttatgaaaaccaaaagtggtgttaggacaattgttgatgcccatgaccacaatgaaaacaacaatattaacaaacacaaaagcaggtacaag |
247 |
Q |
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| T |
45762352 |
gatgatgtttatgaaaaccaaaagtggtgttaggacaattgttgatgcccatgaccacaatgaaaacaacaatattaacaaacacaaaagcaggtacaag |
45762253 |
T |
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| Q |
248 |
ccatgagcatgactccctatg |
268 |
Q |
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| T |
45762252 |
ccatgagcatgactctctatg |
45762232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 118
Target Start/End: Complemental strand, 39279342 - 39279296
Alignment:
| Q |
72 |
gaagaaggaccaagcaatggattctccctaaaaggctgaaaagagaa |
118 |
Q |
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| T |
39279342 |
gaagaaggaccaagcaaaggattctctttcaaaggctgaaaagagaa |
39279296 |
T |
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